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MN234216.1__QFG13312.1__SEA_GILGAMESH_120__00120
Bact-VirMN234216.1__QFG13312.1__SEA_GILGAMESH_120__00120
Identity
- Accession:
- MN234216 ↗
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Taxonomy
TaxID: 2599890
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-77
D2
high
residues 87-142
Domain cluster:
representative
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 68.0 | 6.38e-01 | 100.0% | 72.5% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 70.0 | 7.01e-01 | 92.9% | 98.2% |
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.83 | 69.0 | 7.05e-01 | 100.0% | 94.4% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 72.0 | 5.43e-01 | 100.0% | 66.9% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 70.0 | 6.68e-01 | 100.0% | 81.8% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 64.0 | 6.81e-01 | 85.7% | 98.0% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 71.0 | 6.42e-01 | 100.0% | 75.3% |
| 1x6gA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.80 | 71.0 | 6.24e-01 | 98.2% | 79.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 68.0 | 6.43e-01 | 98.2% | 79.4% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.79 | 69.0 | 5.10e-01 | 98.2% | 60.0% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 70.0 | 6.71e-01 | 100.0% | 87.3% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.79 | 66.0 | 6.36e-01 | 91.1% | 93.7% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 69.0 | 6.76e-01 | 100.0% | 91.9% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.78 | 61.0 | 6.34e-01 | 92.9% | 90.4% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 61.0 | 5.22e-01 | 89.3% | 53.3% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 69.0 | 6.67e-01 | 100.0% | 100.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 63.0 | 5.99e-01 | 91.1% | 76.9% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 67.0 | 6.67e-01 | 100.0% | 93.2% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 63.0 | 6.01e-01 | 94.6% | 78.1% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.77 | 67.0 | 5.52e-01 | 100.0% | 59.6% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 65.0 | 5.97e-01 | 100.0% | 72.6% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 61.0 | 5.43e-01 | 87.5% | 82.1% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 60.0 | 5.68e-01 | 87.5% | 89.6% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 62.0 | 5.61e-01 | 91.1% | 88.0% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 59.0 | 6.03e-01 | 87.5% | 98.1% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.74 | 57.0 | 5.70e-01 | 89.3% | 80.7% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 65.0 | 4.95e-01 | 100.0% | 44.4% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 63.0 | 6.37e-01 | 100.0% | 96.4% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 57.0 | 5.96e-01 | 85.7% | 100.0% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 63.0 | 5.80e-01 | 96.4% | 78.1% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.73 | 56.0 | 5.74e-01 | 87.5% | 87.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 63.0 | 5.73e-01 | 100.0% | 81.8% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.73 | 63.0 | 5.10e-01 | 100.0% | 56.0% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 62.0 | 6.15e-01 | 98.2% | 93.2% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 63.0 | 5.63e-01 | 100.0% | 78.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 62.0 | 6.09e-01 | 100.0% | 90.3% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.71 | 61.0 | 5.57e-01 | 100.0% | 97.4% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 5.12e-01 | 83.9% | 73.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 61.0 | 5.38e-01 | 100.0% | 77.1% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 60.0 | 5.83e-01 | 98.2% | 90.3% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 60.0 | 5.01e-01 | 98.2% | 57.3% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.68 | 46.0 | 4.04e-01 | 71.4% | 54.7% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 58.0 | 4.34e-01 | 100.0% | 41.8% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 53.0 | 5.34e-01 | 96.4% | 96.4% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 54.0 | 4.85e-01 | 98.2% | 67.5% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 55.0 | 4.27e-01 | 100.0% | 44.8% |
| 2rceA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 49.0 | 4.07e-01 | 92.9% | 84.0% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 46.0 | 3.29e-01 | 87.5% | 40.3% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.58 | 46.0 | 4.07e-01 | 92.9% | 97.8% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 50.0 | 3.76e-01 | 100.0% | 58.3% |
| 3d31A03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 41.0 | 3.85e-01 | 76.8% | 74.6% |
| 5amhA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.57 | 41.0 | 3.43e-01 | 78.6% | 76.4% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 3.95e-01 | 100.0% | 56.1% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 47.0 | 3.85e-01 | 96.4% | 79.6% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 45.0 | 3.66e-01 | 100.0% | 55.6% |
| 2b3yA05 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.55 | 42.0 | 2.90e-01 | 91.1% | 88.1% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 43.0 | 3.30e-01 | 89.3% | 48.2% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.54 | 45.0 | 4.08e-01 | 92.9% | 69.7% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.54 | 41.0 | 3.24e-01 | 89.3% | 72.8% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.32e-01 | 92.9% | 81.1% |
| 2kigA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.52 | 41.0 | 3.08e-01 | 92.9% | 41.0% |
| 6j5cA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.52 | 41.0 | 3.70e-01 | 91.1% | 69.9% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.50 | 38.0 | 3.07e-01 | 85.7% | 51.2% |
| 2xstA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.17e-01 | 100.0% | 72.5% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3533770 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.86 | 75.0 | 6.03e-01 | 100.0% | 51.4% |
| 3850775 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.84 | 73.0 | 6.91e-01 | 98.2% | 81.5% |
| 3414912 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.84 | 74.0 | 5.90e-01 | 100.0% | 51.4% |
| 3558188 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.83 | 71.0 | 6.46e-01 | 100.0% | 70.7% |
| 3707634 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 73.0 | 7.37e-01 | 100.0% | 98.2% |
| 5042892 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.83 | 74.0 | 7.28e-01 | 100.0% | 95.0% |
| 3190835 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.83 | 72.0 | 6.21e-01 | 100.0% | 63.5% |
| 3405627 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 73.0 | 6.03e-01 | 96.4% | 56.8% |
| 3579591 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.82 | 71.0 | 7.24e-01 | 94.6% | 96.4% |
| 4015427 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 71.0 | 4.72e-01 | 100.0% | 25.1% |
| 3737903 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.82 | 69.0 | 7.03e-01 | 98.2% | 96.4% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 71.0 | 6.10e-01 | 94.6% | 90.6% |
| 3440094 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.81 | 73.0 | 7.16e-01 | 100.0% | 95.0% |
| 3199259 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.81 | 70.0 | 6.64e-01 | 100.0% | 81.5% |
| 3910433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 73.0 | 6.94e-01 | 100.0% | 90.8% |
| 3344796 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.81 | 70.0 | 6.19e-01 | 98.2% | 71.1% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.81 | 72.0 | 5.27e-01 | 100.0% | 40.0% |
| 4420173 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.80 | 71.0 | 6.44e-01 | 100.0% | 73.3% |
| 3429053 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.80 | 70.0 | 4.87e-01 | 100.0% | 31.0% |
| 3575865 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.80 | 71.0 | 6.61e-01 | 100.0% | 81.4% |
| 3917568 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.80 | 69.0 | 5.44e-01 | 100.0% | 47.0% |
| 3257650 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 70.0 | 6.05e-01 | 96.4% | 80.0% |
| 3514191 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 69.0 | 5.66e-01 | 100.0% | 54.0% |
| 4002679 | 4.1.1.322 ↗ | beta barrels › SH3 › SH3 › SH3 › GPKOW_C | 0.79 | 68.0 | 5.33e-01 | 100.0% | 45.0% |
| 3795301 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.79 | 68.0 | 6.06e-01 | 100.0% | 67.5% |
| 3476478 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 64.0 | 5.36e-01 | 96.4% | 52.6% |
| 3409299 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.79 | 68.0 | 6.06e-01 | 100.0% | 67.5% |
| 3793311 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.79 | 64.0 | 6.26e-01 | 89.3% | 100.0% |
| 3878271 | 101.1.2.284 ↗ | alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd | 0.78 | 68.0 | 4.89e-01 | 100.0% | 34.8% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 65.0 | 5.43e-01 | 91.1% | 53.7% |
| 3486496 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 67.0 | 6.79e-01 | 100.0% | 98.2% |
| 3885049 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.78 | 65.0 | 6.63e-01 | 94.6% | 98.2% |
| 3880508 | 4.1.1.129 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_5 | 0.78 | 70.0 | 5.84e-01 | 100.0% | 62.1% |
| 3497365 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.78 | 66.0 | 6.65e-01 | 92.9% | 100.0% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 69.0 | 4.51e-01 | 100.0% | 24.4% |
| 3780847 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.78 | 69.0 | 5.03e-01 | 100.0% | 68.7% |
| 3407855 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.77 | 69.0 | 5.82e-01 | 100.0% | 61.1% |
| 3766659 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.77 | 69.0 | 6.82e-01 | 100.0% | 93.3% |
| 4470603 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.77 | 67.0 | 4.79e-01 | 100.0% | 33.3% |
| 3584571 | 4.1.1.56 ↗ | beta barrels › SH3 › SH3 › SH3 › RBB1NT | 0.77 | 69.0 | 4.48e-01 | 100.0% | 29.4% |
| 3584364 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 61.0 | 6.36e-01 | 89.3% | 96.0% |
| 4268386 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 67.0 | 6.27e-01 | 100.0% | 81.4% |
| 4960540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 69.0 | 6.56e-01 | 100.0% | 98.5% |
| 3764432 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 62.0 | 5.97e-01 | 100.0% | 78.5% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.76 | 62.0 | 4.33e-01 | 100.0% | 28.3% |
| 3476178 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 67.0 | 5.23e-01 | 100.0% | 46.7% |
| 3395150 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 67.0 | 6.55e-01 | 100.0% | 96.7% |
| 3947700 | 4.8.1.25 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB | 0.75 | 62.0 | 6.04e-01 | 92.9% | 96.8% |
| 2126408 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.75 | 66.0 | 5.86e-01 | 100.0% | 77.8% |
| 3684460 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.75 | 66.0 | 5.58e-01 | 100.0% | 91.6% |
| 3244497 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.75 | 67.0 | 4.87e-01 | 100.0% | 68.7% |
| 3300074 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 63.0 | 6.41e-01 | 96.4% | 96.3% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 67.0 | 6.23e-01 | 100.0% | 84.3% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 65.0 | 5.78e-01 | 100.0% | 72.3% |
| 3372243 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 66.0 | 5.89e-01 | 100.0% | 73.8% |
| 3421158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 64.0 | 6.32e-01 | 96.4% | 90.0% |
| 5000741 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.74 | 66.0 | 6.34e-01 | 100.0% | 89.2% |
| 3514556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 66.0 | 6.16e-01 | 100.0% | 82.9% |
| 4422252 | 4.1.1.455 ↗ | beta barrels › SH3 › SH3 › SH3 › DSRB | 0.74 | 62.0 | 6.06e-01 | 92.9% | 100.0% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.74 | 64.0 | 5.88e-01 | 100.0% | 73.3% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.74 | 64.0 | 6.39e-01 | 100.0% | 94.9% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.74 | 65.0 | 5.83e-01 | 100.0% | 86.3% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.74 | 65.0 | 5.91e-01 | 100.0% | 84.0% |
| 3926118 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.74 | 65.0 | 6.41e-01 | 100.0% | 100.0% |
| 4161673 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.74 | 64.0 | 5.63e-01 | 100.0% | 65.9% |
| 3855038 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.74 | 64.0 | 4.64e-01 | 100.0% | 35.0% |
| 3450200 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 62.0 | 5.46e-01 | 100.0% | 64.7% |
| 3834303 | 109.4.1.257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 | 0.72 | 61.0 | 3.60e-01 | 98.2% | 11.9% |
| 4505316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 62.0 | 6.12e-01 | 98.2% | 95.0% |
| 3303889 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.72 | 62.0 | 5.74e-01 | 100.0% | 80.0% |
| 3676844 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 63.0 | 5.75e-01 | 100.0% | 76.0% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 64.0 | 4.27e-01 | 100.0% | 27.4% |
| 3471771 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 63.0 | 6.41e-01 | 100.0% | 98.2% |
| 4966163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 61.0 | 5.60e-01 | 100.0% | 73.3% |
| 5053906 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.71 | 63.0 | 6.22e-01 | 100.0% | 93.3% |
| 3368254 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.71 | 61.0 | 6.14e-01 | 98.2% | 98.2% |
| 3342430 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 62.0 | 5.69e-01 | 100.0% | 74.7% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 60.0 | 5.53e-01 | 96.4% | 76.0% |
| 3329059 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.71 | 56.0 | 5.86e-01 | 89.3% | 100.0% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 5.73e-01 | 87.5% | 89.1% |
| 4679625 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 57.0 | 5.58e-01 | 87.5% | 81.7% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.70 | 60.0 | 5.67e-01 | 100.0% | 87.1% |
| 3818428 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.70 | 61.0 | 5.55e-01 | 100.0% | 80.0% |
| 3397845 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 4.96e-01 | 100.0% | 64.8% |
| 3423337 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.69 | 59.0 | 5.35e-01 | 100.0% | 75.0% |
| 3166879 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.69 | 58.0 | 5.57e-01 | 96.4% | 96.9% |
| 3301015 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 57.0 | 5.53e-01 | 98.2% | 95.4% |
| 3719595 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 5.34e-01 | 89.3% | 90.0% |
| 3786518 | 4.8.1.18 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Myosin_N | 0.68 | 57.0 | 5.49e-01 | 96.4% | 98.5% |
| 3737837 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 55.0 | 5.27e-01 | 92.9% | 96.9% |
| 1031172 | 4.1.1.113 ↗ | beta barrels › SH3 › SH3 › SH3 › TraI_2B | 0.67 | 58.0 | 5.40e-01 | 100.0% | 81.9% |
| 3448975 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.66 | 56.0 | 5.42e-01 | 98.2% | 93.8% |
| 4537528 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 57.0 | 5.37e-01 | 100.0% | 97.1% |
| 3301383 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.64 | 50.0 | 5.21e-01 | 96.4% | 100.0% |
| 3636503 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.64 | 54.0 | 5.08e-01 | 98.2% | 94.3% |
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.63 | 50.0 | 4.64e-01 | 91.1% | 70.7% |
| 3660755 | 4.8.1.21 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor | 0.62 | 52.0 | 4.78e-01 | 98.2% | 72.0% |
| 3300051 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.62 | 52.0 | 4.82e-01 | 100.0% | 73.3% |
| 160388 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.58 | 49.0 | 3.90e-01 | 100.0% | 51.6% |
| 5043037 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.54 | 44.0 | 3.81e-01 | 100.0% | 95.0% |
D3
high
residues 238-293
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 45.0 | 4.79e-01 | 75.0% | 85.1% |
| 1nstA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 43.0 | 2.75e-01 | 75.0% | 77.7% |
| 2uv8A05 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 46.0 | 2.72e-01 | 92.9% | 17.2% |
| 2aeuA01 | 3.90.1150.70 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 40.0 | 3.06e-01 | 78.6% | 65.8% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.55 | 40.0 | 4.11e-01 | 80.4% | 88.9% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 35.0 | 3.76e-01 | 73.2% | 85.7% |
| 2laeA00 | 3.30.310.170 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC | 0.54 | 40.0 | 3.28e-01 | 83.9% | 75.4% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.53 | 44.0 | 3.68e-01 | 100.0% | 88.1% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 2.87e-01 | 100.0% | 30.3% |
| 3e0rB01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 35.0 | 2.84e-01 | 71.4% | 32.8% |
| 4uopA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 36.0 | 3.16e-01 | 76.8% | 83.9% |
| 2pmvA02 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.51 | 36.0 | 3.11e-01 | 82.1% | 96.3% |
| 1qhbA00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.50 | 42.0 | 2.43e-01 | 100.0% | 86.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4453799 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.61 | 46.0 | 2.80e-01 | 83.9% | 28.2% |
| 3797710 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.60 | 37.0 | 4.05e-01 | 76.8% | 77.8% |
| 3910066 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 50.0 | 4.48e-01 | 96.4% | 77.5% |
| 4929961 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 42.0 | 3.34e-01 | 80.4% | 73.3% |
| 3967714 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.57 | 43.0 | 3.35e-01 | 85.7% | 82.9% |
| 4033267 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.56 | 38.0 | 3.81e-01 | 73.2% | 71.7% |
| 3698931 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 41.0 | 3.27e-01 | 83.9% | 82.3% |
| 3860784 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.55 | 38.0 | 3.66e-01 | 83.9% | 63.1% |
| 5011203 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.55 | 37.0 | 3.98e-01 | 71.4% | 93.3% |
| 3545762 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 31.0 | 3.40e-01 | 78.6% | 66.7% |
| 3263099 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 40.0 | 2.92e-01 | 85.7% | 63.8% |
| 3945544 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.54 | 37.0 | 3.69e-01 | 73.2% | 71.7% |
| 3531422 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.53 | 39.0 | 2.75e-01 | 83.9% | 53.0% |
| 3503984 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.53 | 31.0 | 3.50e-01 | 76.8% | 80.0% |
| 3289119 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 42.0 | 2.65e-01 | 96.4% | 59.7% |
| 5011923 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.53 | 40.0 | 2.54e-01 | 83.9% | 56.1% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 38.0 | 2.38e-01 | 83.9% | 28.9% |
| 4030100 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.52 | 39.0 | 3.85e-01 | 92.9% | 80.0% |
| 3316665 | 387.1.5.1 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Gamma-thionin | 0.52 | 30.0 | 3.14e-01 | 85.7% | 58.3% |
| 3694130 | 4317.1.1.0 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like | 0.52 | 35.0 | 3.53e-01 | 71.4% | 78.2% |
| 3176914 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.50 | 37.0 | 2.99e-01 | 82.1% | 88.3% |
D4
medium
residues 147-237
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 27.0 | 3.55e-01 | 73.6% | 71.4% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.57 | 44.0 | 3.94e-01 | 83.5% | 86.0% |
| 3payC01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 44.0 | 3.55e-01 | 84.6% | 60.9% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 3.56e-01 | 80.2% | 73.8% |
| 3gf8A01 | 2.60.40.2100 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 41.0 | 3.47e-01 | 82.4% | 62.7% |
| 2m2kA00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.52 | 35.0 | 3.15e-01 | 89.0% | 48.9% |
| 1yp2D01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 39.0 | 2.82e-01 | 82.4% | 46.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600158 | 1118.1.1.1 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 | 0.55 | 41.0 | 3.65e-01 | 80.2% | 57.0% |
| 1885515 | 11.1.1.332 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TcdA1_RBD_3 | 0.53 | 39.0 | 3.43e-01 | 87.9% | 52.2% |
| 3980120 | 7079.1.1.1 ↗ | a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP | 0.52 | 39.0 | 3.48e-01 | 79.1% | 92.3% |
| 3528791 | 11.1.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 | 0.51 | 36.0 | 3.52e-01 | 85.7% | 67.0% |
| 3505375 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.77e-01 | 86.8% | 87.0% |
| 4289847 | 272.1.1.1 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C | 0.50 | 35.0 | 3.52e-01 | 87.9% | 69.5% |
| 5042876 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 41.0 | 3.76e-01 | 90.1% | 92.5% |