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MN234216.1__QFG13324.1__SEA_GILGAMESH_132__00132
Bact-VirMN234216.1__QFG13324.1__SEA_GILGAMESH_132__00132
Identity
- Accession:
- MN234216 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
TaxID: 2599890
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-133
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.67 | 51.0 | 4.66e-01 | 81.1% | 65.0% |
| 1e4eB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.66 | 50.0 | 4.16e-01 | 81.1% | 62.2% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 49.0 | 4.20e-01 | 81.1% | 66.7% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 53.0 | 4.59e-01 | 97.8% | 66.0% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.61 | 47.0 | 4.56e-01 | 100.0% | 73.8% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 37.0 | 4.30e-01 | 94.4% | 92.1% |
| 3e8vA00 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.58 | 34.0 | 3.54e-01 | 80.0% | 62.2% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 50.0 | 3.87e-01 | 100.0% | 95.8% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 35.0 | 3.91e-01 | 90.0% | 76.7% |
| 4oijA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 33.0 | 3.72e-01 | 90.0% | 73.2% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 48.0 | 4.58e-01 | 92.2% | 97.2% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 42.0 | 3.95e-01 | 81.1% | 77.0% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.56 | 33.0 | 3.94e-01 | 77.8% | 98.1% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 34.0 | 3.87e-01 | 86.7% | 81.8% |
| 3orqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 48.0 | 3.68e-01 | 100.0% | 41.2% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 39.0 | 3.89e-01 | 74.4% | 96.8% |
| 3t7aA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 49.0 | 3.79e-01 | 100.0% | 88.1% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 31.0 | 3.17e-01 | 94.4% | 57.6% |
| 1ciyA02 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.54 | 47.0 | 3.65e-01 | 95.6% | 68.9% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 35.0 | 3.92e-01 | 91.1% | 86.6% |
| 4m8aA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 36.0 | 4.07e-01 | 96.7% | 92.5% |
| 2mp1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 37.0 | 3.97e-01 | 92.2% | 81.8% |
| 3pihA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 31.0 | 3.45e-01 | 81.1% | 73.6% |
| 4d8mA03 | 2.100.10.40 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › | 0.52 | 45.0 | 3.52e-01 | 96.7% | 71.9% |
| 3e18A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 41.0 | 3.18e-01 | 86.7% | 74.1% |
| 1c3kA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.51 | 44.0 | 3.81e-01 | 96.7% | 93.7% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.50 | 38.0 | 4.10e-01 | 88.9% | 98.6% |
| 1xezA04 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.50 | 44.0 | 3.80e-01 | 94.4% | 80.7% |
| 4f9zA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 38.0 | 3.69e-01 | 100.0% | 70.9% |
| 4n30A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 44.0 | 3.55e-01 | 100.0% | 87.9% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965457 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.66 | 51.0 | 3.84e-01 | 81.1% | 36.7% |
| 4930976 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.63 | 47.0 | 3.45e-01 | 81.1% | 31.5% |
| 4026147 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 52.0 | 4.19e-01 | 94.4% | 47.8% |
| 3914739 | 223.1.1.78 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC | 0.58 | 41.0 | 3.25e-01 | 74.4% | 70.7% |
| 4116360 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.58 | 36.0 | 4.34e-01 | 93.3% | 95.0% |
| 4952854 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.57 | 32.0 | 3.72e-01 | 94.4% | 76.9% |
| 2872794 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.57 | 37.0 | 3.88e-01 | 94.4% | 72.8% |
| 4026678 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.57 | 33.0 | 3.76e-01 | 95.6% | 75.7% |
| 3245639 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 41.0 | 3.60e-01 | 77.8% | 93.6% |
| 4592530 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.56 | 37.0 | 4.27e-01 | 92.2% | 93.8% |
| 4405336 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.56 | 50.0 | 3.79e-01 | 100.0% | 69.8% |
| 4977469 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 34.0 | 3.75e-01 | 95.6% | 77.1% |
| 4038084 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.55 | 48.0 | 3.65e-01 | 93.3% | 69.0% |
| 3660912 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.55 | 44.0 | 3.84e-01 | 90.0% | 57.7% |
| 3168220 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 36.0 | 3.43e-01 | 81.1% | 55.5% |
| 3890480 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 37.0 | 3.97e-01 | 86.7% | 81.3% |
| 3918073 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 34.0 | 3.86e-01 | 88.9% | 81.4% |
| 4157389 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.55 | 36.0 | 4.12e-01 | 94.4% | 93.8% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 34.0 | 3.80e-01 | 86.7% | 80.0% |
| 1684039 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.55 | 46.0 | 3.74e-01 | 91.1% | 56.6% |
| 3190184 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.55 | 36.0 | 3.58e-01 | 98.9% | 63.2% |
| 3919300 | 206.1.3.42 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPIP5K2_N | 0.55 | 49.0 | 3.48e-01 | 100.0% | 64.7% |
| 1388527 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.54 | 48.0 | 3.68e-01 | 96.7% | 65.3% |
| 4007902 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.54 | 37.0 | 3.41e-01 | 70.0% | 79.1% |
| 1388503 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.54 | 36.0 | 4.08e-01 | 94.4% | 92.6% |
| 4533523 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.53 | 35.0 | 4.05e-01 | 93.3% | 93.8% |
| 2879361 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.53 | 45.0 | 3.73e-01 | 91.1% | 56.1% |
| 3837126 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.53 | 46.0 | 3.79e-01 | 94.4% | 82.6% |
| 3824390 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.53 | 46.0 | 3.80e-01 | 94.4% | 83.2% |
| 3826807 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 38.0 | 3.29e-01 | 77.8% | 89.9% |
| 4633583 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.52 | 46.0 | 3.84e-01 | 96.7% | 81.9% |
| 3441759 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 4.20e-01 | 81.1% | 91.3% |
| 4384999 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.52 | 45.0 | 3.53e-01 | 95.6% | 60.0% |
| 3748051 | 76.1.1.3 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › VOMI | 0.52 | 44.0 | 3.56e-01 | 94.4% | 84.8% |
| 3763243 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.52 | 38.0 | 2.50e-01 | 78.9% | 51.7% |
| 3453263 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.51 | 44.0 | 3.66e-01 | 94.4% | 93.8% |
| None | — | 0.51 | 46.0 | 3.10e-01 | 100.0% | 69.3% | |
| 4487334 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.51 | 44.0 | 3.40e-01 | 96.7% | 63.8% |
| 2458553 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.51 | 42.0 | 3.68e-01 | 93.3% | 99.3% |
| 4037298 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.51 | 44.0 | 3.44e-01 | 97.8% | 65.5% |
| 5077400 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 32.0 | 3.11e-01 | 87.8% | 54.8% |
| 4085332 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.50 | 43.0 | 3.27e-01 | 94.4% | 80.0% |
| 3998421 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 34.0 | 3.83e-01 | 83.3% | 96.9% |