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MN234216.1__QFG13334.1__SEA_GILGAMESH_142__00142
Bact-VirMN234216.1__QFG13334.1__SEA_GILGAMESH_142__00142
Identity
- Accession:
- MN234216 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
TaxID: 2599890
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-64
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.73 | 49.0 | 5.38e-01 | 100.0% | 89.1% |
| 4bdxA00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.70 | 44.0 | 3.92e-01 | 100.0% | 44.6% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 50.0 | 4.14e-01 | 81.0% | 63.1% |
| 3f8uB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 55.0 | 4.30e-01 | 100.0% | 77.4% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 47.0 | 5.07e-01 | 86.2% | 100.0% |
| 3nffH00 | 6.20.250.70 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.61 | 52.0 | 4.28e-01 | 98.3% | 73.0% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 39.0 | 3.26e-01 | 72.4% | 36.4% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 46.0 | 4.00e-01 | 84.5% | 65.2% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.59 | 45.0 | 4.46e-01 | 100.0% | 79.0% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 46.0 | 4.12e-01 | 93.1% | 76.4% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.58 | 49.0 | 3.89e-01 | 98.3% | 69.5% |
| 1a94A00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 45.0 | 3.80e-01 | 98.3% | 51.5% |
| 4xzjA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.57 | 42.0 | 3.02e-01 | 86.2% | 51.7% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 46.0 | 4.40e-01 | 100.0% | 76.5% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 47.0 | 3.70e-01 | 98.3% | 49.6% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.55 | 47.0 | 3.04e-01 | 100.0% | 21.2% |
| 3abiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 47.0 | 3.40e-01 | 100.0% | 50.3% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 38.0 | 3.56e-01 | 100.0% | 58.7% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.07e-01 | 100.0% | 75.9% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.51 | 38.0 | 3.66e-01 | 100.0% | 69.6% |
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 42.0 | 2.76e-01 | 100.0% | 32.8% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.50 | 42.0 | 3.86e-01 | 98.3% | 78.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 54.0 | 5.73e-01 | 100.0% | 92.0% |
| 4945424 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 54.0 | 4.20e-01 | 93.1% | 58.5% |
| 4989491 | 3174.2.1.0 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA | 0.65 | 56.0 | 5.28e-01 | 100.0% | 94.3% |
| 5028171 | 3174.1.1.2 ↗ | beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_S8e | 0.64 | 57.0 | 4.36e-01 | 100.0% | 54.8% |
| 4020463 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.63 | 49.0 | 3.21e-01 | 86.2% | 54.6% |
| 4962837 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.62 | 52.0 | 4.22e-01 | 93.1% | 79.1% |
| 3676128 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.62 | 48.0 | 3.83e-01 | 84.5% | 55.7% |
| 3513418 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.61 | 44.0 | 4.91e-01 | 100.0% | 100.0% |
| 3219441 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.61 | 45.0 | 4.05e-01 | 100.0% | 57.5% |
| 5011673 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 46.0 | 3.79e-01 | 87.9% | 57.4% |
| 4367862 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 50.0 | 4.23e-01 | 100.0% | 81.9% |
| 3385646 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.58 | 39.0 | 3.17e-01 | 70.7% | 43.3% |
| 4931451 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 49.0 | 4.11e-01 | 100.0% | 68.2% |
| 3998298 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 46.0 | 3.23e-01 | 93.1% | 35.7% |
| 5078127 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 49.0 | 4.34e-01 | 96.6% | 96.5% |
| 3278218 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.55 | 47.0 | 4.15e-01 | 100.0% | 96.7% |
| 3450529 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.55 | 41.0 | 3.93e-01 | 81.0% | 70.0% |
| 3906109 | 4135.1.1.0 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like | 0.55 | 42.0 | 3.38e-01 | 91.4% | 50.7% |
| 3245433 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.54 | 40.0 | 2.51e-01 | 79.3% | 32.8% |
| 3843366 | 9.2.1.9 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Pep_M12B_propep | 0.53 | 44.0 | 3.78e-01 | 100.0% | 74.3% |
| 3991047 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.53 | 44.0 | 3.76e-01 | 98.3% | 93.3% |
| 5056462 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.53 | 43.0 | 3.87e-01 | 98.3% | 86.7% |
| 4992459 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.52 | 42.0 | 4.01e-01 | 94.8% | 95.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.52 | 40.0 | 3.77e-01 | 89.7% | 82.7% |
| 3938627 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.51 | 44.0 | 4.08e-01 | 100.0% | 94.7% |
| 3356274 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.51 | 35.0 | 3.02e-01 | 100.0% | 44.2% |
| 3424562 | 304.107.1.8 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › AAA_assoc | 0.51 | 41.0 | 3.25e-01 | 91.4% | 76.0% |
| 3299711 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.51 | 40.0 | 3.23e-01 | 94.8% | 68.1% |