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MN234216.1__QFG13335.1__SEA_GILGAMESH_143__00143

Bact-Vir

MN234216.1__QFG13335.1__SEA_GILGAMESH_143__00143

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-88
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 58.0 4.56e-01 86.5% 52.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.25e-01 86.5% 73.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.51e-01 86.5% 90.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 59.0 4.11e-01 90.5% 46.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 57.0 4.52e-01 89.2% 60.9%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.57e-01 86.5% 93.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.21e-01 75.7% 84.8%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 63.0 4.98e-01 100.0% 66.9%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 59.0 4.28e-01 97.3% 90.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.99e-01 86.5% 83.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.07e-01 73.0% 88.7%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 4.83e-01 87.8% 67.4%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.30e-01 100.0% 81.7%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.65e-01 87.8% 84.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.81e-01 73.0% 87.3%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 58.0 4.63e-01 100.0% 68.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 5.09e-01 87.8% 90.5%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 58.0 4.00e-01 100.0% 83.9%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 57.0 4.38e-01 100.0% 98.3%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 51.0 4.64e-01 86.5% 90.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 54.0 4.20e-01 90.5% 69.2%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 54.0 4.16e-01 90.5% 66.7%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 44.0 2.92e-01 71.6% 29.4%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.63 47.0 4.42e-01 79.7% 96.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.46e-01 73.0% 81.2%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 3.14e-01 86.5% 66.6%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.51e-01 83.8% 82.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 50.0 4.09e-01 94.6% 83.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 42.0 3.39e-01 74.3% 71.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 47.0 3.72e-01 85.1% 82.0%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 47.0 3.59e-01 86.5% 72.7%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 42.0 3.48e-01 77.0% 62.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 48.0 4.16e-01 91.9% 84.3%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.48e-01 97.3% 46.5%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.58 41.0 3.61e-01 87.8% 49.5%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 42.0 3.75e-01 79.7% 52.7%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.11e-01 78.4% 91.1%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.44e-01 90.5% 63.5%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 47.0 3.86e-01 93.2% 82.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 41.0 3.13e-01 79.7% 30.9%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.30e-01 86.5% 79.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 3.37e-01 81.1% 63.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 36.0 4.19e-01 78.4% 100.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.48e-01 90.5% 68.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.54 32.0 3.78e-01 78.4% 89.6%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.61e-01 83.8% 91.7%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.36e-01 85.1% 61.8%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.33e-01 86.5% 62.2%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 43.0 2.92e-01 90.5% 50.2%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.24e-01 77.0% 54.5%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 40.0 3.31e-01 85.1% 57.2%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.05e-01 86.5% 53.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.33e-01 89.2% 69.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 56.0 5.32e-01 86.5% 65.9%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 55.0 5.22e-01 86.5% 64.7%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 53.0 4.99e-01 86.5% 62.2%
3793962 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 57.0 5.31e-01 86.5% 67.8%
3585538 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 57.0 5.10e-01 86.5% 61.0%
3521904 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.69e-01 91.9% 92.6%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.57e-01 85.1% 90.0%
3474784 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.73 62.0 4.62e-01 91.9% 62.9%
3582876 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 56.0 4.96e-01 86.5% 58.1%
3374893 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.72 62.0 4.90e-01 93.2% 66.9%
3395766 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.72 62.0 4.64e-01 94.6% 64.4%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.55e-01 89.2% 94.4%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 52.0 5.58e-01 86.5% 87.7%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 4.79e-01 87.8% 66.9%
3242335 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 62.0 4.54e-01 95.9% 48.7%
3510024 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 57.0 4.98e-01 86.5% 80.0%
4001653 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 62.0 4.62e-01 95.9% 52.2%
3460287 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 59.0 4.60e-01 91.9% 56.2%
3826525 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 61.0 3.86e-01 94.6% 24.9%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 52.0 4.43e-01 86.5% 48.3%
3313137 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 61.0 4.70e-01 94.6% 56.9%
3501834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.44e-01 86.5% 100.0%
3819710 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.70 60.0 4.39e-01 94.6% 45.5%
3422227 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.70 60.0 3.95e-01 94.6% 28.7%
4029199 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 57.0 3.21e-01 87.8% 8.5%
3823515 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.70 60.0 4.69e-01 94.6% 60.0%
3330137 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.70 60.0 4.63e-01 94.6% 57.5%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 50.0 5.21e-01 75.7% 84.8%
3824811 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.69 58.0 4.55e-01 91.9% 59.4%
4446791 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.08e-01 73.0% 84.6%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.09e-01 73.0% 84.6%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 53.0 5.59e-01 86.5% 92.3%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.37e-01 86.5% 87.7%
3444064 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.69 59.0 4.35e-01 94.6% 45.6%
2672307 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.69 62.0 4.86e-01 100.0% 62.2%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 51.0 5.37e-01 87.8% 87.7%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.69 51.0 5.00e-01 86.5% 73.8%
3950208 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.02e-01 73.0% 84.6%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 49.0 5.15e-01 75.7% 86.2%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.37e-01 87.8% 89.2%
3212772 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 51.0 5.11e-01 86.5% 79.7%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 49.0 5.12e-01 75.7% 86.2%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.68 56.0 4.17e-01 90.5% 56.8%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 47.0 4.99e-01 73.0% 86.2%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.05e-01 74.3% 86.2%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 50.0 5.29e-01 87.8% 87.7%
3590827 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 47.0 4.99e-01 73.0% 84.6%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.08e-01 75.7% 87.7%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.04e-01 75.7% 86.2%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 52.0 5.32e-01 86.5% 87.1%
3302166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 51.0 5.37e-01 86.5% 92.3%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.13e-01 86.5% 87.7%
4158157 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 4.97e-01 75.7% 86.2%
4646632 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 46.0 4.83e-01 73.0% 84.6%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 55.0 4.59e-01 90.5% 82.4%
3491615 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.66 52.0 3.59e-01 90.5% 25.2%
4419948 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 45.0 4.76e-01 73.0% 84.6%
3454181 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 58.0 4.41e-01 100.0% 63.9%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 47.0 5.01e-01 87.8% 89.2%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.25e-01 87.8% 86.5%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 47.0 5.00e-01 87.8% 89.2%
3236073 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 48.0 4.86e-01 86.5% 80.0%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 44.0 4.66e-01 73.0% 84.6%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 44.0 4.65e-01 73.0% 86.2%
3554713 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.06e-01 86.5% 56.7%
3536187 219.1.1.41 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.63 50.0 4.08e-01 87.8% 55.0%
3923766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.23e-01 85.1% 72.2%
4878713 331.3.1.42 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.61 46.0 4.14e-01 79.7% 99.0%
3948020 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.59 43.0 3.76e-01 77.0% 53.6%
5018715 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.47e-01 78.4% 96.7%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 43.0 4.26e-01 87.8% 78.8%
3699678 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 42.0 3.18e-01 82.4% 65.8%
5071561 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.54 41.0 3.22e-01 82.4% 70.0%
3498392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.68e-01 89.2% 81.5%
3217366 389.1.2.3 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › DUF282 0.53 40.0 4.09e-01 94.6% 83.6%
3964086 4056.1.1.10 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › ResB 0.53 40.0 3.50e-01 95.9% 53.0%
6689 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.51 39.0 3.35e-01 85.1% 89.7%
3618524 216.1.1.26 a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.51 44.0 3.36e-01 100.0% 72.4%
4083689 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.50 38.0 3.40e-01 82.4% 56.9%
4373556 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.50 39.0 2.99e-01 86.5% 85.8%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.50 38.0 3.80e-01 82.4% 100.0%