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MN234216.1__QFG13339.1__SEA_GILGAMESH_147__00147
Bact-VirMN234216.1__QFG13339.1__SEA_GILGAMESH_147__00147
Identity
- Accession:
- MN234216 ↗
- Kingdom:
- phage
Quality
95.6
mean pLDDT
Taxonomy
TaxID: 2599890
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-157
Domain cluster:
rep: MN234216.1__QFG13325.1__SEA_GILGAMESH_133__00133__D116-276
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.75 | 37.0 | 4.20e-01 | 87.2% | 62.8% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.72 | 34.0 | 3.54e-01 | 84.0% | 47.9% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.71 | 34.0 | 3.63e-01 | 84.0% | 51.4% |
| 2fjlA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 30.0 | 2.81e-01 | 81.6% | 36.7% |
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.61 | 55.0 | 4.77e-01 | 98.4% | 75.7% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.61 | 42.0 | 4.80e-01 | 73.6% | 98.9% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.60 | 36.0 | 4.44e-01 | 94.4% | 93.8% |
| 3gfhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.59 | 47.0 | 5.04e-01 | 100.0% | 97.3% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 37.0 | 4.29e-01 | 75.2% | 88.8% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 35.0 | 4.27e-01 | 72.8% | 94.9% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.26e-01 | 79.2% | 79.8% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 40.0 | 3.97e-01 | 72.0% | 92.6% |
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 40.0 | 4.23e-01 | 97.6% | 84.5% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 41.0 | 3.23e-01 | 80.0% | 86.7% |
| 2jheA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 37.0 | 3.95e-01 | 70.4% | 88.9% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.54 | 40.0 | 3.60e-01 | 77.6% | 71.8% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 38.0 | 2.86e-01 | 77.6% | 93.1% |
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 39.0 | 3.95e-01 | 96.0% | 82.1% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 36.0 | 3.81e-01 | 93.6% | 84.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4458952 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.78 | 35.0 | 3.51e-01 | 84.0% | 41.7% |
| 3888322 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.75 | 34.0 | 3.79e-01 | 84.0% | 54.0% |
| 3686517 | 220.1.1.112 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 | 0.73 | 34.0 | 3.11e-01 | 84.0% | 33.9% |
| 3627778 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.72 | 32.0 | 3.59e-01 | 84.0% | 53.0% |
| 3707284 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.71 | 33.0 | 3.42e-01 | 84.0% | 46.7% |
| 1097232 | 3180.1.1.1 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG | 0.69 | 36.0 | 3.85e-01 | 89.6% | 57.9% |
| 4062527 | 244.2.1.7 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C | 0.68 | 38.0 | 4.50e-01 | 79.2% | 80.0% |
| 3946569 | 244.2.1.7 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C | 0.67 | 37.0 | 4.60e-01 | 84.0% | 86.3% |
| 5047623 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.62 | 39.0 | 4.60e-01 | 83.2% | 92.9% |
| 3283279 | 881.1.1.15 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 | 0.61 | 47.0 | 4.65e-01 | 79.2% | 76.9% |
| 4030718 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 33.0 | 3.37e-01 | 83.2% | 53.3% |
| 3520566 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.60 | 33.0 | 2.95e-01 | 84.0% | 39.4% |
| 4295491 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.58 | 40.0 | 2.94e-01 | 71.2% | 92.4% |
| 5002480 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 39.0 | 3.49e-01 | 70.4% | 53.1% |
| 3473012 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.56 | 44.0 | 3.38e-01 | 84.0% | 65.2% |
| 3579823 | 331.18.1.5 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › PTHB1_pf | 0.55 | 35.0 | 3.87e-01 | 70.4% | 80.0% |
| 4014955 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 38.0 | 3.83e-01 | 71.2% | 80.0% |
| 3496493 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.54 | 38.0 | 3.46e-01 | 75.2% | 69.4% |
| 3165582 | 809.1.1.13 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PF30247 | 0.54 | 41.0 | 3.98e-01 | 82.4% | 75.2% |
| 4259034 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.52 | 40.0 | 3.37e-01 | 80.0% | 88.8% |
| 3280283 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 40.0 | 2.88e-01 | 82.4% | 88.4% |
| None | — | 0.50 | 37.0 | 2.98e-01 | 76.8% | 89.8% |