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MN266305.1__QFG06256.1__X__00007
Bact-VirMN266305.1__QFG06256.1__X__00007
Identity
- Accession:
- MN266305 ↗
- Kingdom:
- phage
Quality
56.7
mean pLDDT
Taxonomy
Sangervirae›
Phixviricota›
Malgrandaviricetes›
Petitvirales›
Microviridae›
Sinsheimervirus›
Shigella_phage_SGF3
TaxID: 2608295
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-98
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 64.0 | 5.19e-01 | 100.0% | 54.1% |
| 8b9zK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 61.0 | 5.53e-01 | 100.0% | 69.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 54.0 | 5.59e-01 | 87.3% | 91.4% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 58.0 | 4.98e-01 | 93.7% | 66.3% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 55.0 | 5.55e-01 | 87.3% | 90.3% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 53.0 | 4.54e-01 | 93.7% | 52.8% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.66 | 59.0 | 4.07e-01 | 100.0% | 66.8% |
| 3bhnA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.64 | 56.0 | 3.87e-01 | 98.4% | 49.3% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.63 | 44.0 | 2.92e-01 | 79.4% | 16.7% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 52.0 | 4.91e-01 | 100.0% | 91.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3226467 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.74 | 66.0 | 5.14e-01 | 100.0% | 47.4% |
| 4146694 | 192.29.1.277 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin | 0.69 | 59.0 | 5.93e-01 | 100.0% | 92.3% |
| 2075294 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.68 | 57.0 | 4.95e-01 | 93.7% | 64.6% |
| 2456957 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.68 | 52.0 | 5.55e-01 | 84.1% | 92.9% |
| 4274516 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.68 | 58.0 | 4.93e-01 | 96.8% | 89.5% |
| 3474564 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.67 | 57.0 | 4.82e-01 | 93.7% | 59.0% |
| 5035232 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 58.0 | 5.66e-01 | 100.0% | 94.3% |