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MN270258.1__QGJ85298.1__X__00071

Bact-Vir

MN270258.1__QGJ85298.1__X__00071

Identity

Accession:
MN270258 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SgaBSJ27_rum

TaxID: 2664388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-92
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 35.3 1.80e-08 63.5% 43.2%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.78 68.0 4.98e-01 100.0% 37.2%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.19e-01 100.0% 62.8%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 3.97e-01 87.3% 39.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.56e-01 98.4% 78.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 6.28e-01 100.0% 98.5%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.69 46.0 5.25e-01 88.9% 100.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.79e-01 98.4% 63.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 6.00e-01 98.4% 98.4%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.60e-01 96.8% 85.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.47e-01 100.0% 93.1%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.53e-01 95.2% 84.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.46e-01 98.4% 81.3%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.76e-01 100.0% 85.7%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.66 59.0 5.05e-01 100.0% 66.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 52.0 4.27e-01 87.3% 80.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 55.0 4.04e-01 100.0% 59.4%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 4.70e-01 95.2% 63.4%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.64 54.0 4.35e-01 100.0% 64.2%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 48.0 4.04e-01 84.1% 76.4%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 3.99e-01 100.0% 70.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 4.03e-01 100.0% 63.1%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 48.0 3.82e-01 90.5% 88.1%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.34e-01 100.0% 78.4%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 52.0 4.28e-01 100.0% 97.5%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 48.0 3.60e-01 88.9% 62.3%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 47.0 3.74e-01 90.5% 83.0%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.73e-01 100.0% 68.2%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.13e-01 100.0% 82.1%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.59e-01 100.0% 85.1%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.78e-01 100.0% 59.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 3.84e-01 100.0% 65.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 46.0 4.06e-01 100.0% 85.6%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 48.0 3.86e-01 96.8% 69.9%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.49e-01 100.0% 65.2%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.76e-01 100.0% 73.2%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 42.0 3.00e-01 90.5% 84.4%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.53e-01 100.0% 61.3%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 45.0 3.77e-01 100.0% 97.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.53 43.0 3.88e-01 96.8% 75.3%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 41.0 3.82e-01 88.9% 74.4%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 43.0 3.15e-01 96.8% 83.4%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.62e-01 77.8% 69.4%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 43.0 4.00e-01 100.0% 79.1%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 35.0 3.30e-01 76.2% 81.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.33e-01 100.0% 92.6%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.53e-01 82.5% 72.1%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.32e-01 100.0% 82.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031159 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.90 85.0 6.15e-01 100.0% 41.6%
4034057 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.88 74.0 6.11e-01 96.8% 53.3%
3590884 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.84 78.0 5.96e-01 100.0% 48.9%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.74 59.0 4.27e-01 98.4% 31.4%
4255818 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 5.09e-01 100.0% 56.0%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.71 62.0 5.65e-01 98.4% 73.8%
157526 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 63.0 6.31e-01 96.8% 100.0%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 64.0 4.95e-01 100.0% 46.7%
5033672 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 63.0 4.45e-01 100.0% 56.4%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.71 58.0 5.52e-01 100.0% 76.7%
4028659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.77e-01 100.0% 83.7%
3935464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 6.01e-01 100.0% 96.7%
3695268 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.70 61.0 4.78e-01 100.0% 45.9%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.70 64.0 5.61e-01 100.0% 77.8%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.79e-01 98.4% 84.0%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.68 54.0 5.14e-01 100.0% 73.3%
3201878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.53e-01 98.4% 52.9%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.36e-01 98.4% 78.8%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 58.0 5.26e-01 98.4% 71.8%
3218201 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.36e-01 98.4% 96.2%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 4.61e-01 98.4% 55.4%
3227565 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 55.0 5.65e-01 92.1% 98.3%
3583485 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.66 57.0 4.87e-01 100.0% 87.6%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 58.0 5.34e-01 98.4% 78.8%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.70e-01 100.0% 93.8%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 56.0 3.76e-01 98.4% 25.4%
3866571 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 57.0 3.40e-01 100.0% 21.3%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.04e-01 100.0% 73.3%
3605922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.85e-01 100.0% 67.0%
3591183 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.73e-01 100.0% 92.4%
3279044 2.1.1.314 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.62 48.0 4.74e-01 82.5% 78.5%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.62 52.0 3.86e-01 100.0% 59.0%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 5.13e-01 98.4% 100.0%
3515504 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.62 40.0 4.09e-01 76.2% 69.5%
3859879 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 53.0 4.19e-01 100.0% 70.0%
5054730 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.59 45.0 3.41e-01 85.7% 65.9%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.59 50.0 4.06e-01 100.0% 73.7%
3871253 220.1.1.122 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › C2_SHIP1-2_first 0.59 49.0 3.94e-01 98.4% 65.0%
3207518 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.58 50.0 3.94e-01 100.0% 70.7%
3933227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.19e-01 100.0% 70.4%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.58 49.0 4.28e-01 98.4% 85.0%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.87e-01 100.0% 95.7%
3493511 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 49.0 3.33e-01 95.2% 48.9%
3483343 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.91e-01 98.4% 86.9%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.57 48.0 3.73e-01 100.0% 78.7%
3713571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.14e-01 100.0% 68.6%
2537708 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.56 45.0 3.71e-01 96.8% 86.5%
3719639 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 3.88e-01 100.0% 72.0%
3627951 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.22e-01 100.0% 84.2%
3288524 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.55 46.0 3.26e-01 100.0% 43.0%
3466738 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.54 46.0 2.77e-01 95.2% 83.6%
4460819 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 47.0 4.09e-01 100.0% 65.0%
2549178 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.53 41.0 3.51e-01 88.9% 77.0%
4032294 3389.1.1.1 ↗ a+b two layers › hypothetical protein SAV0303 › hypothetical protein SAV0303 › hypothetical protein SAV0303 › DUF4467 0.53 44.0 3.94e-01 100.0% 94.9%
4964413 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 45.0 3.09e-01 100.0% 47.2%
3233582 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 39.0 2.61e-01 88.9% 19.0%
3387590 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.51 39.0 3.32e-01 85.7% 91.3%