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MN270258.1__QGJ85303.1__X__00076

Bact-Vir

MN270258.1__QGJ85303.1__X__00076

Identity

Accession:
MN270258 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SgaBSJ27_rum

TaxID: 2664388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-49
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.75 63.0 4.20e-01 100.0% 82.8%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.71 55.0 3.72e-01 100.0% 22.4%
3ugjA02 1.10.8.750 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain 0.69 48.0 4.29e-01 82.9% 50.0%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.68 48.0 4.57e-01 78.0% 64.7%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.67 45.0 3.16e-01 70.7% 50.7%
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.66 48.0 3.36e-01 82.9% 23.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.66 46.0 4.33e-01 75.6% 59.6%
5egnA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 56.0 3.45e-01 100.0% 17.3%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 50.0 3.93e-01 90.2% 40.0%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 47.0 3.12e-01 80.5% 57.5%
4oogC01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.64 45.0 3.15e-01 80.5% 22.8%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.64 46.0 3.28e-01 82.9% 23.6%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.44e-01 90.2% 64.3%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.63 47.0 4.74e-01 80.5% 87.8%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.60 42.0 4.08e-01 75.6% 66.7%
1th0B00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.59 47.0 3.09e-01 100.0% 62.8%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 3.99e-01 80.5% 62.3%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 38.0 3.24e-01 75.6% 39.2%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 2.79e-01 92.7% 94.5%
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.53 42.0 3.72e-01 92.7% 76.6%
2zm5A02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.52 41.0 3.56e-01 92.7% 77.8%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.52 44.0 3.41e-01 100.0% 61.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4517192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 60.0 3.81e-01 75.6% 22.6%
3979831 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 57.0 4.94e-01 78.0% 53.8%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 55.0 4.78e-01 78.0% 49.2%
3504619 108.1.1.105 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_STIM1 0.72 57.0 4.57e-01 92.7% 43.5%
None — 0.69 49.0 2.94e-01 75.6% 9.8%
3502052 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 57.0 3.30e-01 100.0% 65.8%
3316490 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.67 56.0 4.25e-01 100.0% 40.0%
5069130 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.66 46.0 4.36e-01 73.2% 60.0%
3248250 2004.1.1.154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.66 46.0 2.77e-01 80.5% 9.3%
3841941 7512.1.1.4 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.65 49.0 3.11e-01 90.2% 25.7%
4163553 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.64 45.0 2.81e-01 80.5% 12.1%
3508663 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.63 47.0 3.09e-01 80.5% 39.5%
3478493 541.1.1.0 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.62 46.0 4.56e-01 80.5% 77.8%
3863652 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.60 50.0 3.32e-01 100.0% 58.3%
4656873 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.59 49.0 3.56e-01 97.6% 63.7%
3719010 541.1.1.0 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.59 42.0 4.03e-01 80.5% 70.0%
4317463 604.39.1.3 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.58 46.0 3.18e-01 97.6% 64.0%
3493395 541.1.1.1 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › RIIa 0.56 40.0 3.94e-01 80.5% 73.3%
5009434 11.1.1.157 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3501 0.56 41.0 2.95e-01 80.5% 22.7%
3728531 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.53 43.0 3.33e-01 100.0% 43.6%
D2 high residues 60-179
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zowA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 37.0 3.58e-01 74.2% 59.7%
3gwaA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 37.0 3.38e-01 74.2% 50.9%
3aqbB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 48.0 3.53e-01 100.0% 57.9%
2nutB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.53 40.0 3.67e-01 78.3% 71.2%
3il4A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 36.0 3.35e-01 73.3% 56.1%
1zvuA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.51 34.0 3.24e-01 77.5% 56.4%
1f0lA02 1.10.490.40 Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain 0.50 35.0 3.11e-01 72.5% 94.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4065523 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.69 49.0 5.02e-01 78.3% 76.5%
4224874 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.67 48.0 4.90e-01 78.3% 76.5%
4058294 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.66 48.0 4.63e-01 77.5% 66.7%
4149622 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.64 55.0 4.31e-01 92.5% 58.0%
3935995 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.62 37.0 4.55e-01 95.8% 94.7%
4423880 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.62 52.0 4.57e-01 90.0% 85.1%
4100609 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.62 52.0 4.64e-01 90.8% 84.7%
4426593 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.57 45.0 4.05e-01 85.0% 74.7%
4061582 632.7.1.32 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_M 0.57 27.0 3.26e-01 80.8% 66.7%
3932719 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 41.0 3.35e-01 83.3% 90.9%
3178533 2004.1.1.363 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.52 40.0 2.49e-01 84.2% 19.3%
3952558 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.52 31.0 3.18e-01 77.5% 62.6%
4205503 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 39.0 3.31e-01 78.3% 85.3%