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MN270258.1__QGJ85309.1__X__00082

Bact-Vir

MN270258.1__QGJ85309.1__X__00082

Identity

Accession:
MN270258 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SgaBSJ27_rum

TaxID: 2664388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-191
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.76 69.0 6.70e-01 95.3% 91.3%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 67.0 6.54e-01 97.7% 88.2%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.75 69.0 6.60e-01 97.7% 91.7%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.74 66.0 6.46e-01 95.3% 95.6%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.73 51.0 4.58e-01 95.3% 53.3%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 64.0 6.39e-01 95.3% 91.0%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 65.0 6.19e-01 97.7% 94.6%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 67.0 6.47e-01 100.0% 95.8%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 62.0 5.96e-01 95.3% 90.5%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 61.0 5.84e-01 95.3% 81.2%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 55.0 4.94e-01 92.2% 60.8%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.69 46.0 4.16e-01 96.1% 50.0%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 62.0 6.30e-01 99.2% 97.6%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 64.0 6.08e-01 100.0% 94.6%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 60.0 5.95e-01 96.9% 88.7%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 61.0 6.13e-01 95.3% 93.9%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 61.0 6.04e-01 94.5% 90.2%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 59.0 6.01e-01 96.9% 95.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.69 45.0 4.14e-01 95.3% 51.5%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 61.0 6.07e-01 94.5% 93.1%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 60.0 5.52e-01 95.3% 76.2%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 63.0 5.90e-01 100.0% 86.4%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 60.0 5.59e-01 95.3% 94.3%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 60.0 5.60e-01 95.3% 93.7%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 60.0 5.18e-01 95.3% 86.2%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 58.0 5.86e-01 97.7% 90.7%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 59.0 5.83e-01 95.3% 90.2%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 59.0 6.00e-01 94.5% 97.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 58.0 5.81e-01 94.5% 91.4%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 60.0 5.44e-01 95.3% 86.8%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 62.0 6.04e-01 100.0% 93.5%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 58.0 5.63e-01 95.3% 85.8%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 59.0 5.22e-01 95.3% 92.0%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 56.0 5.76e-01 97.7% 98.3%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 58.0 5.14e-01 95.3% 84.2%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 56.0 5.63e-01 95.3% 95.3%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.78e-01 94.5% 88.5%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.58 51.0 4.24e-01 95.3% 63.8%
1wpuA00 3.40.1510.10 Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP 0.56 43.0 4.11e-01 80.5% 96.6%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 49.0 4.85e-01 97.7% 89.6%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 40.0 3.85e-01 75.8% 84.4%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.54 47.0 3.68e-01 96.1% 43.5%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 46.0 4.04e-01 95.3% 63.7%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.06e-01 92.2% 63.2%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 44.0 3.79e-01 95.3% 60.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 3.12e-01 100.0% 46.1%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 36.0 3.48e-01 75.8% 84.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288890 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.80 69.0 6.87e-01 91.4% 88.5%
3941713 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.79 69.0 6.73e-01 93.0% 95.0%
3962486 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.77 67.0 6.30e-01 98.4% 76.6%
3587514 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.75 67.0 6.66e-01 99.2% 92.3%
5059048 243.1.1.13 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.73 65.0 6.63e-01 95.3% 96.7%
3278632 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.72 64.0 6.33e-01 95.3% 92.6%
3728760 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.72 64.0 5.87e-01 95.3% 80.0%
4950139 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.72 64.0 6.46e-01 97.7% 96.0%
3290450 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.71 63.0 6.13e-01 95.3% 86.0%
3732871 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.71 63.0 5.61e-01 95.3% 80.3%
3960625 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.71 63.0 6.01e-01 95.3% 90.7%
3588483 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.71 61.0 6.05e-01 95.3% 89.6%
4479712 243.1.1.3 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.70 64.0 5.72e-01 100.0% 92.8%
3782298 243.1.1.14 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Mtr2 0.70 62.0 5.56e-01 95.3% 93.7%
4593105 243.1.1.3 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.70 53.0 5.43e-01 79.7% 95.2%
4080326 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.70 54.0 5.56e-01 92.2% 85.8%
3283278 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.70 62.0 6.12e-01 95.3% 94.1%
3515333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 47.0 5.50e-01 94.5% 98.9%
135742 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.69 62.0 6.03e-01 95.3% 87.7%
4162701 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.69 53.0 5.49e-01 92.2% 85.8%
1094951 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.69 60.0 5.52e-01 95.3% 76.2%
3764790 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 46.0 5.26e-01 93.0% 92.6%
4927707 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.68 61.0 5.92e-01 97.7% 95.0%
4884000 243.1.1.1 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.68 60.0 5.59e-01 94.5% 92.3%
5032792 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.67 41.0 3.98e-01 80.5% 54.3%
3293799 243.1.1.24 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ARC6-like_IMS 0.67 61.0 5.76e-01 98.4% 83.3%
3281948 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.67 56.0 5.84e-01 90.6% 95.0%
170212 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.65 56.0 5.76e-01 97.7% 98.3%
169776 243.1.1.4 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PHZA_PHZB 0.65 58.0 5.34e-01 95.3% 76.5%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.62 47.0 4.17e-01 96.1% 55.1%
4343712 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.61 49.0 5.08e-01 91.4% 92.5%
3936676 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 41.0 4.69e-01 93.0% 92.6%
3604270 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.60 39.0 3.92e-01 85.9% 63.8%
3165475 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.59 52.0 4.85e-01 93.8% 88.6%
3597592 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 52.0 4.49e-01 98.4% 76.1%
3750494 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.59 51.0 4.38e-01 95.3% 62.0%
3700510 243.1.1.94 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26532 0.58 52.0 4.50e-01 98.4% 78.0%
3285112 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.57 44.0 3.92e-01 95.3% 55.8%
3800723 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 50.0 4.03e-01 95.3% 54.7%
4464656 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 48.0 3.87e-01 95.3% 45.9%
3875620 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 50.0 4.33e-01 98.4% 80.5%
3461207 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.54 41.0 3.87e-01 81.2% 90.6%
3715923 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.54 49.0 3.40e-01 100.0% 43.1%
3764436 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 43.0 3.94e-01 96.1% 64.6%
3434245 9.3.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.53 47.0 4.25e-01 95.3% 89.4%
3530920 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 46.0 3.96e-01 96.1% 64.4%
None — 0.53 40.0 3.18e-01 93.0% 38.1%
4647627 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 45.0 3.84e-01 95.3% 59.1%
3760087 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 42.0 3.61e-01 96.1% 53.7%
1102013 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 44.0 3.86e-01 95.3% 62.1%
3646327 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 39.0 3.67e-01 95.3% 64.4%
3541529 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.51 45.0 3.13e-01 96.1% 30.9%
3627039 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 44.0 3.63e-01 95.3% 52.7%
3802939 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.67e-01 82.8% 97.0%
4096366 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.50 38.0 3.90e-01 78.9% 85.6%
3807704 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.13e-01 93.8% 84.0%