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MN270258.1__QGJ85310.1__X__00083

Bact-Vir

MN270258.1__QGJ85310.1__X__00083

Identity

Accession:
MN270258 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-80
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.87 81.0 7.37e-01 100.0% 83.3%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.63 31.0 4.24e-01 80.0% 92.7%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.58 45.0 4.80e-01 96.2% 100.0%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 41.0 3.21e-01 75.0% 55.7%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 41.0 3.50e-01 75.0% 64.4%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.54e-01 76.2% 58.7%
1w66A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.62e-01 100.0% 89.4%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.45e-01 98.8% 81.0%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 47.0 3.68e-01 100.0% 79.1%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 38.0 3.02e-01 75.0% 44.1%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 41.0 4.29e-01 91.3% 97.2%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 3.24e-01 98.8% 83.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 2.99e-01 86.3% 39.6%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.40e-01 97.5% 85.2%
1fc4A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 37.0 3.17e-01 76.2% 61.8%
3p1tA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.55e-01 85.0% 100.0%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 3.16e-01 98.8% 83.5%
1hxdA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 42.0 3.31e-01 100.0% 84.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590274 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.92 87.0 8.31e-01 100.0% 96.7%
8015 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.87 81.0 7.37e-01 100.0% 83.3%
4166935 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.86 81.0 7.41e-01 100.0% 85.0%
4680318 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.86 80.0 7.66e-01 100.0% 94.4%
4539347 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.85 79.0 7.25e-01 100.0% 86.0%
4639076 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 74.0 6.96e-01 100.0% 84.2%
3943026 375.1.1.39 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon 0.77 71.0 6.33e-01 100.0% 81.7%
3942532 375.1.1.39 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon 0.75 69.0 6.76e-01 100.0% 95.3%
4940785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 69.0 6.04e-01 100.0% 87.0%
4995759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 57.0 5.74e-01 86.3% 98.8%
3576759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 5.41e-01 77.5% 98.6%
3056107 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 57.0 5.19e-01 91.3% 85.7%
3786106 4357.1.1.3 beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.61 42.0 3.85e-01 70.0% 95.2%
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 40.0 3.56e-01 71.2% 85.0%
3929050 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 42.0 3.85e-01 78.8% 80.9%
4980935 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.58 49.0 3.60e-01 100.0% 82.0%
3241448 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 43.0 3.93e-01 81.2% 82.7%
3958056 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 40.0 3.59e-01 75.0% 65.3%
5011773 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.57 48.0 3.50e-01 98.8% 82.0%
1678131 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.57 41.0 3.97e-01 76.2% 82.2%
5080564 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.56 40.0 3.91e-01 76.2% 87.8%
4004238 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.55 47.0 3.43e-01 98.8% 80.4%
3786278 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.55 48.0 3.64e-01 97.5% 72.6%
7027 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.54 46.0 3.62e-01 98.8% 86.2%
4988938 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.54 45.0 3.29e-01 98.8% 77.3%
3710689 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 45.0 4.23e-01 92.5% 87.0%
4023881 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.53 45.0 3.20e-01 97.5% 84.7%
4999071 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.53 46.0 3.32e-01 100.0% 84.4%
3781457 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.53 44.0 4.55e-01 95.0% 98.7%
4947841 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.53 44.0 3.26e-01 98.8% 84.0%
4191331 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.52 44.0 3.36e-01 100.0% 85.0%
3289790 235.1.1.23 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.52 45.0 3.71e-01 100.0% 79.4%
4929392 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 37.0 3.63e-01 88.7% 70.0%
3692657 4357.1.1.3 beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.51 39.0 3.39e-01 82.5% 69.1%
5069928 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.50 42.0 3.12e-01 98.8% 84.5%
5038404 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.50 43.0 3.34e-01 97.5% 87.0%
3722558 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.50 44.0 4.42e-01 100.0% 100.0%
D2 medium residues 98-183
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.76 58.0 6.18e-01 100.0% 94.5%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.69 62.0 5.47e-01 100.0% 96.0%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 54.0 4.66e-01 98.8% 82.7%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 53.0 4.41e-01 98.8% 68.1%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 53.0 3.91e-01 100.0% 57.7%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 51.0 4.24e-01 98.8% 68.9%
3dddA02 3.40.630.90 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.60 48.0 4.08e-01 98.8% 52.7%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 4.10e-01 90.7% 89.9%
1qo7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.29e-01 100.0% 47.0%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 47.0 4.10e-01 97.7% 71.3%
4qlaB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 3.17e-01 97.7% 45.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.55 37.0 3.66e-01 88.4% 64.2%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.70e-01 97.7% 68.5%
4qa9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.08e-01 98.8% 44.6%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.75e-01 96.5% 98.8%
8ckpA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 3.20e-01 95.3% 41.8%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 27.0 3.12e-01 98.8% 70.2%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 3.15e-01 96.5% 93.3%
1dc1A01 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 42.0 3.19e-01 90.7% 61.3%
6b1zA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.51 36.0 3.16e-01 73.3% 87.6%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.51 43.0 3.85e-01 97.7% 99.2%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 34.0 2.78e-01 95.3% 36.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588210 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.91 83.0 7.82e-01 96.5% 99.0%
3948068 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.77 69.0 6.37e-01 98.8% 92.7%
3297022 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.77 60.0 6.38e-01 97.7% 96.0%
6450 4023.1.1.2 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › Helic-prim_T7_N 0.75 57.0 6.07e-01 100.0% 94.5%
3978060 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.69 62.0 5.95e-01 100.0% 96.0%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.65 58.0 5.62e-01 100.0% 92.6%
11072 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 54.0 4.56e-01 98.8% 77.2%
5012458 206.1.3.23 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.61 49.0 3.51e-01 86.0% 61.3%
5047099 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 50.0 3.98e-01 97.7% 65.5%
3983134 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.59 34.0 3.22e-01 77.9% 49.0%
3282434 7579.1.1.97 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN 0.58 49.0 3.23e-01 97.7% 43.4%
3949704 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.57 42.0 3.60e-01 84.9% 48.6%
3510883 7579.1.1.97 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN 0.55 47.0 3.04e-01 97.7% 40.7%
3281885 7579.1.1.31 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › EHN 0.55 46.0 3.10e-01 95.3% 45.9%
3896138 7579.1.1.97 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN 0.55 47.0 3.03e-01 98.8% 38.0%
4988150 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 43.0 4.10e-01 98.8% 71.4%
3208973 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 42.0 3.84e-01 95.3% 63.2%
1293256 7579.1.1.97 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN 0.54 46.0 3.08e-01 98.8% 44.6%
3607300 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 36.0 4.17e-01 81.4% 100.0%
3751809 7579.1.1.31 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › EHN 0.54 46.0 2.97e-01 98.8% 36.6%
1877353 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.53 27.0 3.55e-01 74.4% 100.0%
3289852 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 45.0 3.57e-01 98.8% 96.9%
4944566 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 35.0 3.20e-01 88.4% 51.3%
5046585 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.53 34.0 3.79e-01 98.8% 86.2%
2448551 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 39.0 3.55e-01 100.0% 58.0%
4611698 9.1.1.28 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin 0.52 42.0 3.80e-01 93.0% 79.2%
5052072 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.52 38.0 3.68e-01 81.4% 67.0%
3947165 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 43.0 3.61e-01 100.0% 52.7%
11122 213.2.1.1 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy › Ivy 0.52 43.0 3.89e-01 97.7% 98.4%
3965839 77.1.1.6 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.52 37.0 3.08e-01 75.6% 48.4%
3282339 243.1.1.106 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3516 0.50 40.0 3.70e-01 88.4% 97.4%
3988065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 36.0 3.83e-01 82.6% 88.0%
D3 medium residues 184-335
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13155.13 best Toprim_2 23.4 8.60e-05 44.1% 63.6%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gujA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.74 52.0 5.72e-01 95.4% 87.2%
1q57G02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.74 52.0 5.64e-01 95.4% 85.7%
2au3A03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.71 50.0 5.50e-01 95.4% 88.7%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 42.0 4.83e-01 86.2% 80.9%
2fcjB00 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.67 50.0 5.67e-01 94.1% 100.0%
6n2nC03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 43.0 4.94e-01 92.1% 91.0%
3fojA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.65 36.0 4.30e-01 88.2% 80.8%
3gk5A00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.65 36.0 4.31e-01 88.8% 81.0%
1wv9A00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.65 33.0 4.18e-01 87.5% 83.9%
2o1sB03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 45.0 4.87e-01 96.7% 85.8%
4kxwA03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 47.0 5.00e-01 96.7% 86.5%
1yt8A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.63 37.0 4.35e-01 90.8% 82.4%
6ouvA03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 46.0 4.86e-01 94.7% 86.4%
2jgdA04 3.40.50.11610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain 0.62 48.0 4.79e-01 96.7% 77.4%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.61 55.0 4.87e-01 97.4% 91.7%
2bfdB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 44.0 4.85e-01 91.4% 92.8%
2dgdA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 38.0 4.08e-01 75.7% 73.6%
1dz3A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 44.0 4.78e-01 94.7% 96.7%
2zbkA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.58 53.0 4.58e-01 96.7% 92.5%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.58 45.0 4.66e-01 90.1% 87.0%
1bgwA02 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 50.0 4.84e-01 94.7% 85.4%
4h08A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 49.0 4.51e-01 95.4% 92.0%
4fi3F02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 37.0 3.98e-01 90.1% 78.6%
1jflA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 36.0 4.20e-01 75.7% 89.9%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 50.0 4.01e-01 94.7% 91.6%
2mr5A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 40.0 4.22e-01 84.2% 81.6%
1k66A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 4.43e-01 89.5% 83.9%
3kxpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 4.06e-01 95.4% 91.0%
2o1mA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 32.0 3.56e-01 82.9% 69.4%
2d5lA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 4.12e-01 96.7% 89.1%
2h8gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 46.0 3.87e-01 87.5% 89.8%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 4.13e-01 96.7% 89.1%
2hu8A02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 4.09e-01 96.7% 83.9%
3ibtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 4.34e-01 94.7% 90.7%
7px8A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.98e-01 96.7% 90.7%
1jmkC01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 4.62e-01 97.4% 90.1%
1xfdA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 48.0 4.05e-01 98.7% 89.6%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 34.0 3.45e-01 84.9% 63.8%
5i7wA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 32.0 3.62e-01 93.4% 78.1%
3sy8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 4.03e-01 86.2% 83.1%
2bd0A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 45.0 3.93e-01 94.1% 87.6%
4b4dA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 41.0 4.05e-01 83.6% 91.4%
3wzlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.71e-01 94.7% 90.5%
3o03A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.63e-01 91.4% 82.7%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 3.44e-01 92.1% 72.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588209 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.77 67.0 7.05e-01 93.4% 97.9%
4504313 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.72 50.0 5.52e-01 95.4% 87.2%
3838443 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.71 54.0 5.90e-01 98.0% 96.0%
5017203 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.69 45.0 5.09e-01 94.7% 87.8%
5053073 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.68 44.0 5.11e-01 94.7% 90.7%
4947932 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.67 45.0 5.02e-01 94.7% 87.8%
4385053 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.67 48.0 4.67e-01 94.7% 66.7%
5081996 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.67 45.0 4.87e-01 92.8% 81.6%
3462741 2003.1.2.127 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › adh_short 0.66 29.0 3.71e-01 75.0% 67.8%
4944209 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.66 47.0 5.00e-01 94.7% 83.8%
2462401 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.66 44.0 4.91e-01 93.4% 87.3%
4108692 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.65 36.0 4.29e-01 88.2% 81.0%
3902663 4230.1.1.0 alpha arrays › DnaD domain › DnaD domain › DnaD domain 0.64 32.0 3.60e-01 94.1% 60.0%
4302576 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.64 48.0 5.12e-01 95.4% 88.8%
4030959 7522.1.1.4 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.64 44.0 4.87e-01 92.8% 89.2%
4937007 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.63 47.0 5.03e-01 92.8% 89.2%
3595935 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.63 48.0 5.10e-01 94.7% 91.5%
5046909 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.63 44.0 4.79e-01 94.7% 86.4%
4275547 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.63 46.0 4.96e-01 95.4% 88.5%
4406968 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.63 46.0 4.64e-01 94.7% 75.8%
5071855 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.63 44.0 4.36e-01 94.7% 66.7%
4980564 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.63 44.0 4.51e-01 87.5% 74.5%
3953569 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.62 47.0 4.86e-01 95.4% 84.3%
5029279 2007.2.2.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.62 40.0 4.45e-01 88.2% 80.8%
3356601 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.62 47.0 4.77e-01 94.7% 81.1%
4488757 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.61 46.0 4.82e-01 94.7% 85.0%
4318842 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.61 47.0 4.87e-01 95.4% 86.4%
3638395 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 32.0 4.18e-01 85.5% 93.8%
3723137 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.61 46.0 4.63e-01 96.1% 78.7%
3170897 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.61 43.0 4.60e-01 94.7% 83.0%
4968857 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.61 55.0 4.80e-01 97.4% 93.3%
4977847 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.61 55.0 4.70e-01 97.4% 86.6%
3176224 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.60 46.0 4.87e-01 92.8% 90.4%
4985760 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.60 54.0 4.64e-01 96.7% 88.5%
4234884 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.60 43.0 4.59e-01 90.8% 83.7%
5009494 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.59 46.0 4.97e-01 99.3% 96.9%
4946402 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.59 50.0 4.62e-01 90.8% 86.5%
3383505 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.58 50.0 4.81e-01 92.1% 92.0%
4968224 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.58 45.0 4.36e-01 81.6% 81.2%
4972800 2006.1.3.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim 0.57 52.0 4.84e-01 97.4% 91.5%
4974714 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.57 44.0 4.49e-01 99.3% 82.7%
5058388 2007.15.1.19 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7768 0.57 37.0 4.29e-01 90.1% 90.9%
4170338 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.57 38.0 4.27e-01 86.2% 88.7%
4947086 2007.3.1.3 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig 0.57 44.0 4.23e-01 82.9% 83.3%
4952716 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.56 46.0 4.87e-01 99.3% 97.8%
2121895 2007.1.14.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.56 44.0 4.40e-01 89.5% 80.4%
5055188 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.56 45.0 4.76e-01 100.0% 95.6%
4995481 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.56 45.0 4.62e-01 100.0% 88.0%
4984246 2007.3.1.4 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Citrate_bind 0.56 48.0 4.50e-01 92.8% 82.2%
4983946 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.56 45.0 4.75e-01 100.0% 96.3%
3925232 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.55 37.0 3.40e-01 88.2% 53.2%
2603057 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.55 49.0 3.95e-01 96.7% 77.6%
5017188 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.55 46.0 4.54e-01 99.3% 83.6%
3832260 7579.1.1.94 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Peptidase_S15 0.54 48.0 3.98e-01 96.7% 84.7%
3439604 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.54 48.0 4.02e-01 97.4% 87.5%
5069208 2007.3.1.1 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA 0.54 46.0 4.50e-01 92.8% 82.9%
4481477 7579.1.1.27 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.53 46.0 3.67e-01 94.1% 76.4%
3983740 7579.1.1.29 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › UPF0227 0.53 43.0 4.04e-01 87.5% 91.3%
4546833 7579.1.1.29 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › UPF0227 0.51 42.0 3.99e-01 88.8% 93.9%
4945154 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 38.0 3.65e-01 77.6% 100.0%