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MN270258.1__QGJ85327.1__X__00100

Bact-Vir

MN270258.1__QGJ85327.1__X__00100

Identity

Accession:
MN270258 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SgaBSJ27_rum

TaxID: 2664388

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-116
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lvlA01 2.170.150.60 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.79 71.0 6.58e-01 98.9% 97.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 46.0 3.98e-01 71.9% 80.6%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 38.0 2.87e-01 70.8% 76.7%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.40e-01 71.9% 64.3%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 2.80e-01 100.0% 29.8%
2olgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.56e-01 80.9% 86.1%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.51 33.0 2.39e-01 100.0% 21.3%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 36.0 3.27e-01 73.0% 70.8%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 33.0 3.18e-01 97.8% 56.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1697854 270.2.1.0 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI 0.88 83.0 7.64e-01 100.0% 82.6%
4082866 270.2.1.1 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI › Spa1_C 0.85 79.0 7.32e-01 100.0% 96.4%
1831984 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.58 36.0 3.73e-01 91.0% 65.5%
4932742 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.69e-01 79.8% 70.0%
3926465 219.1.1.94 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.52 36.0 2.98e-01 73.0% 98.3%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.86e-01 97.8% 92.3%
3286467 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 37.0 2.97e-01 78.7% 62.6%
D2 high residues 138-237
PDB
Domain cluster: rep: MN270258.1__QGJ85327.1__X__00100__D28-116
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18218.7 best Spa1_C 106.5 1.20e-30 96.0% 100.0%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lvlA01 2.170.150.60 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.72 64.0 6.18e-01 99.0% 95.6%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 3.44e-01 76.0% 49.3%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 32.0 2.21e-01 100.0% 16.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 30.0 3.46e-01 100.0% 77.9%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 30.0 3.21e-01 83.0% 60.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 28.0 3.42e-01 100.0% 83.3%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 33.0 3.51e-01 100.0% 71.9%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 40.0 2.68e-01 81.0% 100.0%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.51 35.0 3.16e-01 70.0% 67.9%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.46e-01 100.0% 93.0%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 31.0 3.50e-01 100.0% 81.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4082866 270.2.1.1 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI › Spa1_C 0.94 91.0 8.74e-01 100.0% 93.6%
1697854 270.2.1.0 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI 0.76 62.0 6.08e-01 100.0% 79.8%
184825 270.2.1.1 ↗ beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI › Spa1_C 0.72 64.0 5.91e-01 99.0% 84.4%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 30.0 3.74e-01 100.0% 86.7%
5046375 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.54 32.0 3.54e-01 100.0% 72.5%
4864462 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 25.0 2.51e-01 87.0% 40.2%
3273591 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 36.0 3.29e-01 99.0% 52.3%
3218911 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.63e-01 98.0% 63.0%