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MN270266.1__QGJ85880.1__X__00075

Bact-Vir

MN270266.1__QGJ85880.1__X__00075

Identity

Accession:
MN270266 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SsuFJZZ32_rum

TaxID: 2664396

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-191
PDB
Domain cluster: rep: js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00004__D188-347
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 34.0 4.70e-01 91.4% 100.0%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 22.0 3.28e-01 88.6% 80.8%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 23.0 3.31e-01 88.0% 84.0%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.55 20.0 2.67e-01 89.7% 57.6%
2dgtA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 22.0 3.25e-01 85.1% 86.3%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 27.0 3.45e-01 98.9% 86.0%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 18.0 3.10e-01 79.4% 90.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986771 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.80 57.0 6.64e-01 99.4% 98.5%
5082315 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.77 56.0 6.41e-01 99.4% 99.2%
3508541 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.77 56.0 6.42e-01 99.4% 100.0%
4319900 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.76 59.0 6.52e-01 100.0% 98.6%
2482289 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.71 47.0 5.45e-01 97.1% 90.7%
4643976 101.1.2.654 ↗ alpha arrays › HTH › HTH › winged helix domain › RPA 0.70 62.0 6.38e-01 98.3% 98.2%
4312327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.72e-01 98.3% 91.2%
4437876 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.87e-01 95.4% 100.0%
4192947 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.64 57.0 5.94e-01 96.6% 100.0%
3685640 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.60 25.0 3.50e-01 82.9% 77.6%
3772874 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 23.0 3.20e-01 88.0% 81.3%
D2 high residues 199-313
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 42.0 4.72e-01 98.3% 72.2%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 40.0 5.25e-01 98.3% 98.4%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 44.0 5.01e-01 98.3% 80.2%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 41.0 4.24e-01 100.0% 59.1%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 42.0 5.21e-01 97.4% 100.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 46.0 5.37e-01 98.3% 97.5%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.66 51.0 5.23e-01 99.1% 86.1%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 37.0 4.49e-01 98.3% 88.9%
2ff4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.43e-01 100.0% 78.8%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 42.0 4.70e-01 99.1% 94.3%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.60 32.0 3.96e-01 98.3% 84.5%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.56 31.0 3.83e-01 100.0% 89.7%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 35.0 3.18e-01 89.6% 43.1%
3eo7A01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 47.0 3.71e-01 100.0% 65.1%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 47.0 3.85e-01 100.0% 71.3%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.51 44.0 3.75e-01 95.7% 91.9%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 43.0 4.41e-01 93.9% 100.0%
3ub0A02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.50 37.0 4.01e-01 100.0% 97.8%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.50 44.0 3.72e-01 99.1% 59.4%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 27.0 3.26e-01 100.0% 80.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029177 101.1.2.297 ↗ alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.70 46.0 4.96e-01 97.4% 78.0%
3221607 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.68 39.0 4.86e-01 95.7% 96.9%
3594111 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 49.0 5.42e-01 96.5% 97.7%
4651301 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.66 40.0 4.08e-01 100.0% 60.9%
4420150 101.1.2.58 ↗ alpha arrays › HTH › HTH › winged helix domain › MukE 0.65 51.0 4.84e-01 100.0% 70.4%
5045956 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 41.0 4.70e-01 98.3% 92.5%
4560206 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.63 41.0 4.62e-01 99.1% 84.4%
3568884 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.63 44.0 3.89e-01 99.1% 49.7%
3273635 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.77e-01 100.0% 75.2%
3217245 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 40.0 4.78e-01 100.0% 100.0%
3258350 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.54e-01 98.3% 75.0%
5013277 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.62e-01 98.3% 73.6%
3400838 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.59 38.0 4.12e-01 99.1% 77.9%
3732281 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 49.0 3.32e-01 96.5% 72.7%
3857980 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.57 45.0 4.69e-01 100.0% 89.9%
3257275 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.56 33.0 4.04e-01 91.3% 94.3%
3605901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.60e-01 100.0% 89.1%
4027178 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 4.02e-01 99.1% 78.1%
3710097 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.04e-01 99.1% 67.9%
None — 0.55 41.0 3.42e-01 95.7% 45.1%
3408710 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.55 48.0 3.21e-01 100.0% 72.2%
1518918 283.2.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.55 40.0 4.11e-01 81.7% 78.6%
3717954 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 38.0 4.21e-01 99.1% 93.3%
3031755 4315.1.1.1 ↗ beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 0.54 34.0 3.49e-01 89.6% 64.0%
3700362 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 40.0 4.21e-01 99.1% 91.9%
4970028 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.53 40.0 3.07e-01 81.7% 71.9%
2605331 4315.1.1.1 ↗ beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 0.53 34.0 3.32e-01 89.6% 57.9%
3781009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 31.0 2.34e-01 85.2% 23.3%
3419603 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.52 29.0 3.24e-01 76.5% 67.8%
5056133 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.52 47.0 3.93e-01 100.0% 63.5%
185216 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.52 47.0 3.83e-01 100.0% 71.8%
166404 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.52 47.0 3.85e-01 100.0% 72.3%
5051631 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.51 39.0 3.02e-01 82.6% 70.2%
5079102 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.51 46.0 4.08e-01 100.0% 70.6%
3554191 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.51 46.0 3.37e-01 100.0% 49.8%
3722124 101.1.2.165 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.51 46.0 4.45e-01 100.0% 87.9%
3734448 101.1.2.51 ↗ alpha arrays › HTH › HTH › winged helix domain › Sec62 0.51 45.0 4.39e-01 99.1% 95.4%
5057764 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.50 45.0 3.86e-01 100.0% 62.6%