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MN270270.1__QGJ86095.1__X__00002

Bact-Vir

MN270270.1__QGJ86095.1__X__00002

Identity

Accession:
MN270270 ↗
Kingdom:
phage

Quality

96.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14414.13 best WHH 40.4 2.80e-10 54.5% 53.5%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.47e-01 78.2% 80.2%
1weyA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 50.0 4.13e-01 89.1% 46.2%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.71e-01 78.2% 75.2%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.61 46.0 4.23e-01 90.9% 63.4%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.86e-01 78.2% 92.8%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 50.0 4.06e-01 100.0% 72.3%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.59 43.0 3.65e-01 92.7% 45.3%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 49.0 3.61e-01 100.0% 60.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 43.0 3.90e-01 89.1% 55.7%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 47.0 3.85e-01 89.1% 49.1%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 4.09e-01 89.1% 69.8%
4xaaA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 43.0 2.94e-01 81.8% 89.6%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.58 42.0 3.55e-01 80.0% 75.2%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.58 41.0 3.45e-01 90.9% 42.6%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 45.0 4.04e-01 92.7% 60.9%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 44.0 4.10e-01 90.9% 65.3%
6hbzA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 45.0 3.28e-01 87.3% 92.5%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.37e-01 80.0% 66.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 41.0 3.89e-01 89.1% 64.7%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 42.0 3.90e-01 89.1% 62.9%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 41.0 3.93e-01 89.1% 66.2%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 3.63e-01 89.1% 50.5%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.47e-01 80.0% 67.7%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.49e-01 80.0% 81.1%
2c2nA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 42.0 3.87e-01 87.3% 67.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 39.0 3.58e-01 89.1% 56.0%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 37.0 3.66e-01 90.9% 63.9%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 43.0 4.08e-01 89.1% 73.1%
2qlvB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.35e-01 89.1% 47.1%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 44.0 3.32e-01 100.0% 70.6%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.40e-01 89.1% 46.9%
1qwkA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.54 45.0 2.89e-01 100.0% 56.1%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 42.0 3.99e-01 89.1% 71.0%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 41.0 3.75e-01 89.1% 64.6%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 40.0 3.64e-01 87.3% 59.5%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 46.0 3.95e-01 100.0% 93.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.22e-01 80.0% 70.3%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 44.0 3.60e-01 96.4% 66.0%
3dr5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.80e-01 89.1% 26.4%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.50e-01 89.1% 62.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.52 38.0 3.30e-01 83.6% 64.2%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 2.75e-01 80.0% 41.7%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.38e-01 89.1% 55.8%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 40.0 3.47e-01 90.9% 54.3%
4rl1A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 36.0 3.40e-01 89.1% 59.2%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.51 40.0 3.64e-01 92.7% 88.7%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.29e-01 89.1% 53.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023948 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.66 49.0 4.53e-01 87.3% 62.9%
4999703 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.65 49.0 4.24e-01 89.1% 51.1%
3236950 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.64 49.0 4.65e-01 100.0% 70.0%
5051073 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.63 46.0 4.19e-01 85.5% 58.7%
3721769 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.62 46.0 3.80e-01 89.1% 44.0%
4933206 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 49.0 4.32e-01 89.1% 60.0%
3778303 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 47.0 4.01e-01 89.1% 54.0%
5068720 306.4.1.0 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.61 47.0 4.39e-01 87.3% 95.7%
4024381 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 47.0 4.25e-01 89.1% 61.3%
3420784 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 45.0 3.86e-01 89.1% 50.5%
4945310 306.4.1.0 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.60 46.0 3.95e-01 89.1% 70.0%
3743674 4143.1.1.0 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.60 47.0 4.23e-01 90.9% 61.3%
3603426 304.156.1.3 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 0.59 49.0 4.18e-01 100.0% 67.0%
4640123 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 46.0 3.88e-01 90.9% 48.6%
5075962 306.4.1.0 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.59 45.0 3.93e-01 89.1% 81.9%
3617015 304.120.1.12 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.59 46.0 4.02e-01 89.1% 56.5%
3193502 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 49.0 3.86e-01 98.2% 88.0%
4937799 4956.1.1.0 a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 45.0 4.24e-01 87.3% 68.6%
4992385 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.58 42.0 3.96e-01 89.1% 62.9%
3701227 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.58 43.0 3.63e-01 89.1% 44.8%
4119221 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.57 42.0 4.01e-01 89.1% 67.7%
3401714 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 44.0 3.64e-01 92.7% 43.3%
3178364 319.1.1.19 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.57 44.0 3.65e-01 87.3% 91.4%
3877011 327.11.2.51 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_1 0.57 44.0 4.01e-01 92.7% 62.5%
3512169 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 43.0 3.67e-01 90.9% 50.0%
3981377 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.57 42.0 4.04e-01 89.1% 69.2%
3650582 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 43.0 4.01e-01 90.9% 66.7%
3660389 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.56 42.0 4.13e-01 89.1% 86.2%
5010022 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.56 45.0 3.95e-01 90.9% 63.5%
3660837 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 42.0 3.79e-01 89.1% 56.5%
4943445 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 41.0 3.79e-01 89.1% 60.0%
3590556 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 42.0 3.94e-01 87.3% 67.1%
4975800 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 42.0 3.21e-01 94.5% 33.6%
4439160 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.55 41.0 4.00e-01 89.1% 72.3%
4929444 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.43e-01 80.0% 66.3%
4965197 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 42.0 3.83e-01 89.1% 65.0%
3920054 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 43.0 4.00e-01 89.1% 68.6%
3840475 304.9.1.104 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_2 0.54 42.0 3.78e-01 94.5% 96.7%
4196765 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 3.87e-01 89.1% 68.6%
3486001 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.54 41.0 3.82e-01 87.3% 62.7%
3705003 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 47.0 3.19e-01 100.0% 79.5%
3657246 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.54 37.0 3.11e-01 85.5% 41.1%
4396408 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.53 40.0 2.83e-01 89.1% 23.2%
4246625 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 41.0 3.74e-01 89.1% 63.7%
3954543 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 38.0 2.94e-01 80.0% 52.4%
3895823 327.11.2.42 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_6 0.53 40.0 3.83e-01 89.1% 72.3%
4363128 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.53 40.0 2.72e-01 89.1% 23.3%
4114423 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.53 38.0 2.61e-01 89.1% 19.1%
3968263 304.9.1.8 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DbpA 0.53 38.0 3.53e-01 87.3% 61.2%
3745161 4323.1.1.2 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.53 38.0 3.30e-01 90.9% 46.0%
4297519 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.53 40.0 3.75e-01 89.1% 66.2%
3669844 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.52 39.0 3.09e-01 89.1% 35.0%
3479114 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 45.0 2.56e-01 100.0% 9.4%
3869516 327.11.2.56 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.52 38.0 3.64e-01 89.1% 69.2%
3887526 304.24.1.18 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N 0.52 40.0 3.66e-01 94.5% 91.8%
4571276 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 40.0 3.62e-01 89.1% 68.8%
4954226 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.51 42.0 3.60e-01 98.2% 77.0%
4316367 304.55.2.7 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.51 39.0 2.78e-01 90.9% 25.6%
4554584 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.51 39.0 2.77e-01 90.9% 25.6%
3471082 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 41.0 3.34e-01 90.9% 52.3%
3876012 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 39.0 3.48e-01 87.3% 58.8%
3271498 304.121.1.1 a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 0.50 38.0 3.36e-01 89.1% 53.3%
3193110 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 42.0 2.71e-01 100.0% 61.0%