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MN270270.1__QGJ86096.1__X__00003

Bact-Vir

MN270270.1__QGJ86096.1__X__00003

Identity

Accession:
MN270270 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SsuJS7_SSU0237

TaxID: 2664400

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-87
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF14567.12 best SUKH_5 27.1 4.60e-06 96.5% 31.9%
PF09346.16 SMI1_KNR4 32.0 2.40e-07 85.1% 41.1%
PF14568.12 SUKH_6 37.0 5.70e-09 81.6% 48.3%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2icgA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.73 61.0 4.94e-01 100.0% 49.1%
2pagA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.69 58.0 4.99e-01 100.0% 59.1%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.56e-01 92.0% 77.0%
4cgxA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.50 34.0 2.82e-01 70.1% 59.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4324619 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.83 55.0 4.79e-01 94.3% 47.2%
3838634 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.82 65.0 5.68e-01 96.6% 57.0%
6664 4205.1.1.5 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SUKH_6 0.73 61.0 4.95e-01 100.0% 49.4%
6665 4205.1.1.4 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SUKH_5 0.69 58.0 4.99e-01 100.0% 59.1%
2066801 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.64 54.0 5.18e-01 100.0% 79.8%
4015541 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.64 55.0 4.02e-01 100.0% 36.5%
3742863 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.63 54.0 3.97e-01 100.0% 36.0%
3577502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 33.0 3.87e-01 93.1% 78.2%
3481670 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.57 52.0 3.92e-01 98.9% 43.5%
4291633 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.56 51.0 4.11e-01 100.0% 58.8%
3841980 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.55 51.0 3.78e-01 100.0% 43.8%
3562392 4205.1.1.3 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.55 51.0 3.78e-01 100.0% 61.0%
3282188 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.55 44.0 3.81e-01 90.8% 88.3%
4938392 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.50 30.0 2.86e-01 88.5% 46.7%
D2 medium residues 88-157
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF09346.16 best SMI1_KNR4 32.6 1.60e-07 95.7% 44.4%
PF14568.12 SUKH_6 32.5 1.40e-07 92.9% 45.8%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 56.0 3.66e-01 100.0% 34.9%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 56.0 3.64e-01 100.0% 39.3%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.63 55.0 3.62e-01 100.0% 42.3%
3rgfA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 45.0 4.09e-01 75.7% 85.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.63 55.0 3.73e-01 100.0% 36.4%
2db5A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 44.0 3.64e-01 77.1% 66.4%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.36e-01 100.0% 52.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 3.14e-01 90.0% 53.6%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 49.0 3.12e-01 91.4% 41.9%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.28e-01 100.0% 47.7%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.88e-01 82.9% 91.1%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.80e-01 84.3% 85.6%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.81e-01 95.7% 63.0%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 4.11e-01 77.1% 76.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 43.0 3.81e-01 84.3% 56.9%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.01e-01 75.7% 78.1%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.77e-01 95.7% 93.3%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 48.0 3.07e-01 100.0% 56.8%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.69e-01 84.3% 89.3%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.56e-01 85.7% 78.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 41.0 3.82e-01 84.3% 64.0%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.07e-01 100.0% 40.6%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 38.0 3.23e-01 78.6% 62.4%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 38.0 3.23e-01 84.3% 44.4%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.52e-01 75.7% 73.2%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.52 43.0 3.64e-01 91.4% 71.8%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 43.0 3.42e-01 100.0% 53.0%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 34.0 3.19e-01 85.7% 53.4%
1rxxC01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.51 40.0 2.69e-01 90.0% 36.1%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 38.0 2.74e-01 81.4% 53.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963711 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.67 54.0 3.11e-01 88.6% 18.5%
4283496 5.1.3.136 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DPPIV_N, PD40 0.65 57.0 3.79e-01 100.0% 39.1%
5009180 5.1.3.127 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Tricorn_N 0.64 56.0 3.73e-01 100.0% 48.3%
3996007 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.62 54.0 3.32e-01 100.0% 43.1%
4495385 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.62 54.0 3.47e-01 100.0% 31.7%
5039064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.33e-01 97.1% 30.4%
4598574 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 52.0 3.80e-01 95.7% 49.7%
4783165 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.61 52.0 4.01e-01 100.0% 87.1%
3575467 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.60 47.0 2.96e-01 95.7% 15.8%
5038410 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 52.0 3.49e-01 98.6% 26.7%
169506 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 44.0 3.83e-01 84.3% 74.1%
3693440 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 50.0 3.70e-01 98.6% 70.8%
3244742 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.57 42.0 2.81e-01 81.4% 19.0%
2607438 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.57 44.0 4.37e-01 87.1% 85.3%
3814457 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 47.0 3.18e-01 100.0% 49.2%
3831275 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 48.0 3.15e-01 100.0% 51.6%
4890891 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 46.0 3.67e-01 91.4% 86.1%
3930831 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 47.0 3.22e-01 100.0% 50.5%
3440964 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 48.0 3.18e-01 100.0% 54.6%
3910253 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 37.0 3.28e-01 71.4% 47.6%
3818615 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 45.0 2.99e-01 98.6% 44.8%
3593811 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.39e-01 82.9% 88.0%
3821141 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 45.0 3.07e-01 100.0% 48.6%
4931355 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 42.0 3.70e-01 90.0% 89.1%
3481353 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.93e-01 100.0% 45.2%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.40e-01 71.4% 85.9%
None — 0.52 39.0 3.31e-01 85.7% 47.5%
3287532 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 37.0 3.43e-01 80.0% 66.0%
3272624 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.50 42.0 3.57e-01 100.0% 74.6%