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MN270278.1__QGJ86580.1__X__00015

Bact-Vir

MN270278.1__QGJ86580.1__X__00015

Identity

Accession:
MN270278 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi-SsuYZDH5_rum

TaxID: 2664408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-117
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00023__D3-96
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.77 72.0 6.53e-01 100.0% 92.4%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 46.0 3.55e-01 83.9% 95.5%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 4.00e-01 87.5% 83.6%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.31e-01 75.9% 79.8%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.58 44.0 4.14e-01 79.5% 86.9%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.31e-01 85.7% 82.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.08e-01 89.3% 83.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 39.0 3.42e-01 89.3% 48.2%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 3.19e-01 83.0% 95.0%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 47.0 4.20e-01 87.5% 68.0%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 32.0 3.40e-01 85.7% 64.6%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 35.0 3.43e-01 86.6% 59.2%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 3.03e-01 83.9% 74.8%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 3.05e-01 87.5% 57.6%
6i0iA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.54 47.0 4.82e-01 97.3% 98.1%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 44.0 4.00e-01 86.6% 81.1%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 39.0 3.44e-01 76.8% 75.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 41.0 3.76e-01 82.1% 85.1%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 37.0 3.30e-01 72.3% 76.7%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 32.0 3.29e-01 85.7% 61.1%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.91e-01 84.8% 66.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 36.0 3.56e-01 75.0% 79.8%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 37.0 3.23e-01 76.8% 84.1%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 31.0 3.30e-01 96.4% 67.6%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 32.0 3.45e-01 99.1% 76.1%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 42.0 3.73e-01 89.3% 70.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4926778 861.1.1.3 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › DUF6438 0.83 76.0 7.41e-01 99.1% 91.9%
4929818 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.80 72.0 6.71e-01 97.3% 97.0%
3293481 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.79 71.0 6.81e-01 95.5% 100.0%
3516347 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.78 72.0 6.41e-01 100.0% 92.3%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.77 70.0 6.48e-01 98.2% 91.4%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 48.0 3.77e-01 77.7% 76.4%
3254772 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 47.0 3.76e-01 78.6% 82.8%
3955040 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.62 54.0 4.07e-01 95.5% 65.8%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 45.0 3.69e-01 77.7% 81.0%
3726238 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.19e-01 84.8% 92.4%
5034929 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 43.0 3.52e-01 78.6% 69.6%
3303863 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.58 45.0 3.22e-01 83.9% 75.7%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 42.0 3.60e-01 76.8% 87.0%
3482454 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 47.0 3.79e-01 89.3% 81.4%
3516909 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 4.11e-01 91.1% 85.7%
4631730 841.1.1.1 ↗ a+b two layers › Subtilisin inhibitor › Subtilisin inhibitor › Subtilisin inhibitor › SSI 0.56 46.0 4.89e-01 96.4% 99.0%
5035184 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 42.0 3.41e-01 78.6% 70.4%
4150469 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 28.0 3.27e-01 100.0% 66.7%
3708862 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 39.0 3.53e-01 72.3% 80.5%
3385468 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.56 43.0 3.46e-01 82.1% 75.9%
3265961 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.55 40.0 3.34e-01 74.1% 86.3%
3282032 841.1.1.1 ↗ a+b two layers › Subtilisin inhibitor › Subtilisin inhibitor › Subtilisin inhibitor › SSI 0.55 47.0 4.81e-01 100.0% 97.2%
1144731 233.1.1.4 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157 0.55 45.0 4.07e-01 87.5% 66.9%
154364 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.55 39.0 3.43e-01 74.1% 75.5%
4278200 841.1.1.1 ↗ a+b two layers › Subtilisin inhibitor › Subtilisin inhibitor › Subtilisin inhibitor › SSI 0.55 47.0 4.83e-01 97.3% 98.1%
3602202 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 41.0 3.40e-01 78.6% 68.9%
3520914 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 47.0 2.70e-01 93.8% 11.0%
3259407 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 27.0 3.08e-01 90.2% 62.4%
5081700 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 42.0 3.66e-01 81.2% 61.8%
3509388 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 46.0 3.04e-01 92.0% 23.2%
4316603 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.54 28.0 3.25e-01 97.3% 70.7%
3217981 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.53 40.0 3.51e-01 92.0% 52.4%
4025460 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 3.00e-01 83.9% 89.2%
5014896 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 35.0 3.10e-01 98.2% 45.3%
3519451 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 44.0 4.01e-01 91.1% 69.7%
3404874 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 39.0 3.14e-01 77.7% 75.2%
3236870 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 3.73e-01 88.4% 68.5%
3514491 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.51 40.0 2.78e-01 83.9% 65.6%
3509387 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 4.26e-01 91.1% 88.3%
3544813 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 41.0 3.55e-01 89.3% 82.2%
3936037 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 36.0 3.98e-01 81.2% 93.3%
1162187 233.1.1.8 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.50 42.0 3.58e-01 89.3% 62.7%
3910955 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.50 41.0 3.37e-01 89.3% 71.9%