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MN270891.1__QFP93902.1__X__00137

Bact-Vir

MN270891.1__QFP93902.1__X__00137

Identity

Accession:
MN270891 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Arnovirus› Pectobacterium_phage_Wc4

TaxID: 2652428

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 53.0 5.12e-01 87.1% 86.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 42.0 4.08e-01 91.4% 58.2%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.65 52.0 4.56e-01 88.6% 72.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.99e-01 85.7% 65.7%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 53.0 4.83e-01 94.3% 84.0%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 50.0 5.00e-01 85.7% 83.3%
1krhA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.63 50.0 4.34e-01 84.3% 87.4%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 4.12e-01 87.1% 62.8%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 4.04e-01 90.0% 61.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.86e-01 85.7% 76.4%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.61 50.0 4.35e-01 92.9% 98.2%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.06e-01 90.0% 57.7%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 3.83e-01 88.6% 59.7%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.04e-01 85.7% 69.0%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 3.86e-01 85.7% 65.1%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 37.0 3.90e-01 100.0% 70.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 3.89e-01 87.1% 94.5%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.78e-01 85.7% 65.1%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 40.0 3.36e-01 71.4% 92.7%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.51e-01 90.0% 51.8%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.61e-01 85.7% 52.1%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.07e-01 85.7% 76.0%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.88e-01 85.7% 83.9%
2flbT00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.46e-01 95.7% 39.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.99e-01 87.1% 74.2%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 40.0 3.54e-01 91.4% 48.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 4.13e-01 85.7% 82.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.57 44.0 3.28e-01 87.1% 84.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.58e-01 85.7% 60.4%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 31.0 3.11e-01 70.0% 50.0%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.55e-01 95.7% 48.3%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.86e-01 91.4% 60.2%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 47.0 4.27e-01 100.0% 70.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.52e-01 88.6% 98.3%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.54 45.0 4.04e-01 92.9% 89.9%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 36.0 3.93e-01 74.3% 92.6%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.59e-01 85.7% 70.9%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.69e-01 91.4% 60.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.53 41.0 3.28e-01 85.7% 73.3%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.45e-01 90.0% 96.4%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 38.0 3.33e-01 77.1% 95.4%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 34.0 2.93e-01 87.1% 39.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.38e-01 90.0% 95.6%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 37.0 3.21e-01 78.6% 97.4%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.51 37.0 3.05e-01 80.0% 87.4%
7cymA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 36.0 3.34e-01 91.4% 58.6%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.14e-01 87.1% 41.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3914736 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.66 51.0 5.32e-01 84.3% 100.0%
5062655 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.64 54.0 3.40e-01 94.3% 32.9%
3214587 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.64 54.0 5.23e-01 97.1% 97.5%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 49.0 4.06e-01 85.7% 61.5%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.28e-01 88.6% 65.8%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 4.22e-01 85.7% 73.9%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 49.0 4.38e-01 85.7% 80.0%
3922234 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.17e-01 85.7% 69.6%
3499509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 4.06e-01 85.7% 68.3%
3929135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.24e-01 85.7% 77.1%
4456818 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.62 40.0 3.68e-01 90.0% 49.5%
3579802 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 3.90e-01 90.0% 57.6%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.61 47.0 4.26e-01 85.7% 80.0%
3648024 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 47.0 3.91e-01 85.7% 66.4%
3935052 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.60 46.0 3.82e-01 85.7% 73.8%
1878249 11.1.1.256 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.59 41.0 3.68e-01 85.7% 52.1%
3593212 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.59 45.0 4.84e-01 82.9% 100.0%
2559772 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.59 47.0 3.94e-01 87.1% 76.0%
3472372 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.59 43.0 3.82e-01 100.0% 52.4%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.91e-01 85.7% 69.6%
3252283 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 45.0 3.80e-01 85.7% 68.8%
3960756 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.58 45.0 2.98e-01 87.1% 48.7%
3619625 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.58 38.0 3.22e-01 90.0% 39.8%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.90e-01 85.7% 67.3%
3280377 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 39.0 3.31e-01 70.0% 88.0%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.86e-01 90.0% 77.6%
4002643 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.43e-01 90.0% 90.5%
3315702 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.56 32.0 2.76e-01 87.1% 37.1%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.55 43.0 3.94e-01 85.7% 74.7%
3552986 11.1.1.275 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N 0.55 37.0 3.48e-01 88.6% 56.5%
3932230 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.55 25.0 2.83e-01 80.0% 52.7%
3651406 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.55 37.0 3.30e-01 70.0% 89.4%
3519749 11.1.1.892 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_F54D1_6 0.55 38.0 3.47e-01 74.3% 91.0%
4980736 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.43e-01 90.0% 54.4%
3352566 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.54 44.0 3.22e-01 92.9% 72.7%
3935794 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.53 45.0 3.67e-01 98.6% 93.8%
4477952 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.53 42.0 2.93e-01 91.4% 95.0%
3378819 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.53 44.0 3.53e-01 94.3% 87.6%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.53 45.0 4.21e-01 98.6% 97.8%
3703741 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.51e-01 88.6% 52.2%
3516087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 31.0 3.09e-01 74.3% 53.3%
3989372 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.86e-01 98.6% 98.0%
3276970 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.20e-01 91.4% 47.3%
3733429 11.1.1.908 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CYK3_C 0.52 38.0 3.29e-01 82.9% 96.8%
3420298 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.52 42.0 3.42e-01 94.3% 88.3%
4146108 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.52 43.0 3.76e-01 98.6% 78.3%
3306408 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.51 42.0 3.36e-01 94.3% 90.0%
3507953 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.99e-01 90.0% 84.3%
3487824 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 2.97e-01 88.6% 48.2%
3877501 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 37.0 3.29e-01 78.6% 92.4%
5039254 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.52e-01 88.6% 72.9%