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MN270892.1__QFP93912.1__X__00002

Bact-Vir

MN270892.1__QFP93912.1__X__00002

Identity

Accession:
MN270892 ↗
Kingdom:
phage

Quality

63.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Pectobacterium_phage_Wc4-1

TaxID: 2652429

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 139-216
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 48.0 4.09e-01 83.3% 100.0%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.11e-01 100.0% 31.6%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 39.0 2.80e-01 80.8% 54.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.94e-01 83.3% 99.5%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.50 35.0 2.91e-01 75.6% 96.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528295 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.57 42.0 3.66e-01 83.3% 98.5%
4257154 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.56 35.0 3.14e-01 82.1% 44.4%
3600810 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 43.0 2.63e-01 85.9% 25.3%
3306435 245.3.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX 0.53 28.0 3.19e-01 96.2% 68.5%
3236774 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 36.0 2.43e-01 74.4% 40.6%
3226288 2484.1.1.190 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.50 37.0 2.73e-01 80.8% 96.4%
3744674 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.50 32.0 2.69e-01 88.5% 36.4%
3839311 304.28.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.50 41.0 3.77e-01 94.9% 98.2%
D2 medium residues 62-138
PDB