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MN276049.1__QEP53284.1__BS46_gp102__00102
Bact-VirMN276049.1__QEP53284.1__BS46_gp102__00102
Identity
- Accession:
- MN276049 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-51
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.73 | 62.0 | 5.29e-01 | 100.0% | 68.3% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.72 | 62.0 | 4.78e-01 | 100.0% | 45.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.71 | 57.0 | 5.70e-01 | 100.0% | 92.0% |
| 6gszA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 57.0 | 4.49e-01 | 100.0% | 43.1% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.70 | 53.0 | 4.53e-01 | 100.0% | 51.3% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.69 | 58.0 | 4.76e-01 | 100.0% | 97.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 58.0 | 4.05e-01 | 100.0% | 30.5% |
| 2f4pA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 47.0 | 3.44e-01 | 100.0% | 27.6% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.66 | 48.0 | 3.41e-01 | 79.2% | 27.5% |
| 3cw3A00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.66 | 47.0 | 3.83e-01 | 100.0% | 39.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.65 | 56.0 | 4.59e-01 | 100.0% | 55.4% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 52.0 | 4.23e-01 | 100.0% | 46.9% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.63 | 52.0 | 4.06e-01 | 100.0% | 41.8% |
| 3bn6A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 53.0 | 3.75e-01 | 100.0% | 55.1% |
| 3tg9A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 42.0 | 2.59e-01 | 75.0% | 10.9% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 46.0 | 4.01e-01 | 97.9% | 51.9% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 50.0 | 4.23e-01 | 100.0% | 71.3% |
| 3vgfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 46.0 | 3.97e-01 | 100.0% | 49.4% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.61 | 52.0 | 3.93e-01 | 100.0% | 43.4% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 45.0 | 4.31e-01 | 97.9% | 71.2% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.60 | 52.0 | 3.83e-01 | 100.0% | 39.7% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 3.80e-01 | 100.0% | 40.1% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 41.0 | 4.00e-01 | 97.9% | 64.9% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 3.37e-01 | 91.7% | 34.4% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 49.0 | 3.60e-01 | 100.0% | 40.1% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 44.0 | 3.64e-01 | 100.0% | 44.0% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.56 | 41.0 | 2.82e-01 | 91.7% | 23.7% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 3.73e-01 | 100.0% | 58.7% |
| 1g6gB00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 46.0 | 3.54e-01 | 100.0% | 96.8% |
| 3uv0B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 45.0 | 3.71e-01 | 97.9% | 99.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 44.0 | 4.08e-01 | 100.0% | 71.2% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.65e-01 | 100.0% | 83.7% |
| 4b6zA01 | 2.60.40.3120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.23e-01 | 100.0% | 39.8% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.51 | 37.0 | 3.55e-01 | 85.4% | 80.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.79 | 69.0 | 6.69e-01 | 100.0% | 87.3% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.78 | 68.0 | 6.57e-01 | 100.0% | 94.5% |
| 5001166 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.76 | 61.0 | 4.46e-01 | 100.0% | 32.6% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 63.0 | 6.26e-01 | 100.0% | 100.0% |
| 3957901 | 304.121.1.1 ↗ | a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 | 0.70 | 59.0 | 4.92e-01 | 100.0% | 84.4% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.68 | 55.0 | 5.21e-01 | 97.9% | 75.0% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 48.0 | 3.61e-01 | 77.1% | 33.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 56.0 | 4.66e-01 | 100.0% | 54.4% |
| 3942510 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 55.0 | 4.53e-01 | 100.0% | 51.6% |
| 4968352 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.66 | 54.0 | 4.59e-01 | 95.8% | 54.1% |
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.64 | 55.0 | 5.39e-01 | 100.0% | 94.3% |
| 4018289 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 51.0 | 3.81e-01 | 100.0% | 85.5% |
| 3687651 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.63 | 52.0 | 3.36e-01 | 100.0% | 18.4% |
| 3993298 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.63 | 51.0 | 4.48e-01 | 97.9% | 97.5% |
| 3285779 | 1185.1.1.0 ↗ | a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae | 0.62 | 52.0 | 3.73e-01 | 100.0% | 31.7% |
| 5016486 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 48.0 | 4.00e-01 | 100.0% | 47.4% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.60 | 46.0 | 4.64e-01 | 100.0% | 85.4% |
| 3988557 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.59 | 43.0 | 2.79e-01 | 83.3% | 70.0% |
| 1937230 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.58 | 48.0 | 3.35e-01 | 91.7% | 33.8% |
| 4982257 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.58 | 49.0 | 3.90e-01 | 100.0% | 69.5% |
| 3562629 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.57 | 46.0 | 3.63e-01 | 100.0% | 56.7% |
| 4947339 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.55 | 45.0 | 3.63e-01 | 93.8% | 60.0% |
| 4089566 | 3857.1.1.1 ↗ | beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding | 0.55 | 43.0 | 3.52e-01 | 100.0% | 45.3% |
| 3637444 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 45.0 | 2.93e-01 | 100.0% | 18.8% |
| 3555970 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.53 | 44.0 | 3.12e-01 | 100.0% | 41.8% |
| 3546356 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.52 | 42.0 | 3.23e-01 | 97.9% | 49.2% |
| 4025385 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.52 | 43.0 | 3.03e-01 | 100.0% | 35.6% |