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MN284893.1__QFP94627.1__SEA_LILMCDREAMY_7__00007
Bact-VirMN284893.1__QFP94627.1__SEA_LILMCDREAMY_7__00007
Identity
- Accession:
- MN284893 ↗
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Taxonomy
TaxID: 2652422
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-102
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m2jA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.68 | 43.0 | 4.63e-01 | 94.2% | 77.5% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.67 | 43.0 | 2.96e-01 | 90.7% | 19.4% |
| 4evuB00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.65 | 40.0 | 4.35e-01 | 94.2% | 76.5% |
| 5wt3A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 45.0 | 3.52e-01 | 100.0% | 35.4% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 40.0 | 4.08e-01 | 96.5% | 69.4% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 3.68e-01 | 100.0% | 45.3% |
| 3eo8A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.58 | 51.0 | 3.85e-01 | 100.0% | 68.0% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 43.0 | 3.88e-01 | 94.2% | 56.2% |
| 1ywqA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 50.0 | 3.90e-01 | 100.0% | 62.8% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.57 | 49.0 | 4.13e-01 | 95.3% | 62.3% |
| 4bbyB04 | 3.30.70.3450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 3.82e-01 | 94.2% | 62.5% |
| 4lowA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.56 | 32.0 | 3.29e-01 | 93.0% | 58.3% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.55 | 47.0 | 3.73e-01 | 100.0% | 66.3% |
| 3gp9A00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.54 | 44.0 | 3.87e-01 | 95.3% | 58.6% |
| 2anrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 36.0 | 3.71e-01 | 93.0% | 72.5% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 44.0 | 3.65e-01 | 100.0% | 50.3% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.53 | 48.0 | 4.09e-01 | 100.0% | 96.4% |
| 3m5kA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 45.0 | 3.76e-01 | 100.0% | 57.1% |
| 3c0wA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 36.0 | 3.28e-01 | 100.0% | 50.8% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 46.0 | 3.78e-01 | 100.0% | 59.6% |
| 3mq2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 46.0 | 3.51e-01 | 100.0% | 85.1% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 35.0 | 3.65e-01 | 96.5% | 74.7% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.52 | 45.0 | 3.94e-01 | 100.0% | 76.3% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 45.0 | 3.87e-01 | 100.0% | 71.1% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.50 | 44.0 | 3.59e-01 | 100.0% | 63.5% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 39.0 | 3.57e-01 | 82.6% | 93.0% |
| 3l4gB01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.50 | 38.0 | 3.78e-01 | 91.9% | 76.4% |
| 5mw8A01 | 3.30.200.110 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe | 0.50 | 42.0 | 3.94e-01 | 100.0% | 83.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940779 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.71 | 46.0 | 5.07e-01 | 94.2% | 81.4% |
| 5056019 | 886.1.1.5 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Bact_hydrolase | 0.65 | 43.0 | 3.70e-01 | 93.0% | 41.4% |
| 4182510 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.63 | 46.0 | 4.53e-01 | 94.2% | 73.3% |
| 3278878 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.63 | 47.0 | 4.35e-01 | 94.2% | 62.7% |
| 4955506 | 2003.1.5.444 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1156 | 0.63 | 43.0 | 2.76e-01 | 70.9% | 30.3% |
| 3839688 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.63 | 50.0 | 5.00e-01 | 100.0% | 83.3% |
| 3705407 | 304.47.1.2 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › FAZ1_cons | 0.61 | 43.0 | 4.23e-01 | 94.2% | 67.4% |
| 3716251 | 304.55.2.8 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons | 0.61 | 43.0 | 4.17e-01 | 94.2% | 66.3% |
| 3716250 | 304.47.1.2 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › FAZ1_cons | 0.61 | 43.0 | 4.17e-01 | 94.2% | 66.3% |
| 3713464 | 375.1.1.207 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons | 0.61 | 42.0 | 4.21e-01 | 93.0% | 70.0% |
| 3705400 | 304.31.1.3 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons | 0.60 | 42.0 | 4.15e-01 | 94.2% | 67.4% |
| 3796322 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.60 | 46.0 | 4.23e-01 | 94.2% | 62.6% |
| 3997189 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.59 | 46.0 | 4.70e-01 | 100.0% | 85.9% |
| 4026677 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.58 | 41.0 | 3.93e-01 | 95.3% | 63.0% |
| 4246133 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 49.0 | 4.76e-01 | 96.5% | 90.5% |
| 4000149 | 312.1.1.8 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C | 0.57 | 49.0 | 4.75e-01 | 100.0% | 88.4% |
| 4947239 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.56 | 43.0 | 4.16e-01 | 100.0% | 72.0% |
| 4187036 | 306.7.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain | 0.56 | 50.0 | 4.60e-01 | 100.0% | 91.8% |
| 3953820 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.55 | 45.0 | 2.96e-01 | 91.9% | 62.4% |
| 3279910 | 2003.1.5.35 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM | 0.55 | 38.0 | 2.78e-01 | 73.3% | 80.7% |
| 3186484 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.55 | 46.0 | 4.62e-01 | 94.2% | 95.6% |
| 3806723 | 304.25.1.2 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › AtuA | 0.54 | 43.0 | 3.91e-01 | 94.2% | 64.3% |
| None | — | 0.53 | 43.0 | 3.17e-01 | 89.5% | 92.5% | |
| 3797657 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.53 | 43.0 | 4.01e-01 | 96.5% | 70.9% |
| None | — | 0.52 | 45.0 | 3.71e-01 | 96.5% | 90.6% | |
| None | — | 0.52 | 33.0 | 3.33e-01 | 95.3% | 61.1% | |
| 3900319 | 2003.1.5.89 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Anamorsin_N | 0.52 | 42.0 | 3.36e-01 | 90.7% | 74.2% |
| 3511169 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 38.0 | 3.87e-01 | 97.7% | 77.6% |
| 3785425 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.52 | 43.0 | 4.00e-01 | 93.0% | 72.7% |
| 3927786 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.52 | 39.0 | 3.35e-01 | 81.4% | 91.0% |
| None | — | 0.52 | 44.0 | 3.62e-01 | 100.0% | 50.0% | |
| 3781530 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 35.0 | 3.53e-01 | 94.2% | 67.8% |
| 3483701 | 213.1.1.62 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ATE_N+ATE_C | 0.51 | 43.0 | 3.15e-01 | 95.3% | 93.8% |
| 4069650 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.50 | 40.0 | 2.89e-01 | 87.2% | 43.1% |