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MN284893.1__QFP94719.1__SEA_LILMCDREAMY_99__00099

Bact-Vir

MN284893.1__QFP94719.1__SEA_LILMCDREAMY_99__00099

Identity

Accession:
MN284893 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.78 57.0 4.38e-01 78.0% 50.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.77 56.0 4.38e-01 79.7% 36.2%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.75 55.0 4.33e-01 78.0% 47.1%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.75 56.0 3.49e-01 79.7% 63.3%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 54.0 4.24e-01 83.1% 36.2%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 52.0 3.84e-01 74.6% 88.6%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.72 53.0 4.69e-01 79.7% 55.4%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.72 63.0 4.55e-01 100.0% 59.1%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 51.0 4.00e-01 79.7% 36.0%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.71 61.0 4.83e-01 98.3% 78.6%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.70 57.0 4.98e-01 89.8% 83.1%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.70 49.0 3.94e-01 76.3% 50.4%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 48.0 3.74e-01 74.6% 43.7%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 59.0 3.63e-01 96.6% 37.7%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.68 61.0 4.12e-01 100.0% 57.7%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 53.0 4.21e-01 86.4% 78.9%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.68 52.0 3.67e-01 83.1% 69.6%
1cmxA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.68 58.0 4.01e-01 100.0% 87.9%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 56.0 3.34e-01 91.5% 29.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.67 55.0 4.14e-01 91.5% 80.8%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 57.0 3.59e-01 98.3% 60.9%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 59.0 4.16e-01 100.0% 71.4%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 56.0 4.56e-01 100.0% 81.0%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.65 57.0 3.58e-01 100.0% 59.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 56.0 3.61e-01 98.3% 90.4%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 55.0 3.60e-01 100.0% 48.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.64 56.0 4.52e-01 100.0% 51.7%
1dm9A00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.64 44.0 3.64e-01 71.2% 62.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.64 47.0 3.80e-01 83.1% 40.2%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 54.0 4.02e-01 100.0% 41.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 51.0 5.01e-01 91.5% 86.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.63 54.0 3.54e-01 100.0% 58.8%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.62 55.0 4.56e-01 100.0% 57.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 51.0 3.29e-01 100.0% 47.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.96e-01 84.7% 70.9%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.61 46.0 3.63e-01 89.8% 37.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 4.08e-01 91.5% 93.6%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 47.0 4.22e-01 96.6% 58.4%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 52.0 3.37e-01 100.0% 96.0%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 49.0 4.24e-01 100.0% 83.7%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.97e-01 94.9% 35.2%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 3.54e-01 100.0% 91.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 50.0 4.01e-01 98.3% 59.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.32e-01 100.0% 87.9%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 4.06e-01 72.9% 87.8%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 47.0 3.66e-01 96.6% 80.1%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 47.0 3.83e-01 98.3% 57.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.30e-01 88.1% 100.0%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 46.0 3.88e-01 100.0% 90.7%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 44.0 3.78e-01 98.3% 95.2%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.36e-01 93.2% 98.4%
1wcuA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 41.0 3.25e-01 100.0% 81.2%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 36.0 3.67e-01 89.8% 83.1%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 36.0 2.99e-01 81.4% 51.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.78 57.0 4.33e-01 79.7% 33.6%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.74 65.0 4.44e-01 100.0% 28.1%
3839298 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.73 50.0 3.98e-01 71.2% 60.0%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.73 53.0 5.30e-01 78.0% 75.0%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 66.0 4.13e-01 100.0% 19.7%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.73 65.0 4.20e-01 100.0% 22.7%
4073557 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.72 65.0 5.40e-01 100.0% 64.0%
1148074 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.72 57.0 3.76e-01 84.7% 52.7%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 59.0 4.63e-01 100.0% 43.2%
3591534 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 54.0 4.23e-01 89.8% 38.4%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 59.0 3.84e-01 100.0% 21.2%
3933159 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 60.0 3.75e-01 93.2% 39.5%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 53.0 4.97e-01 78.0% 65.7%
5005555 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.71 58.0 3.63e-01 89.8% 26.7%
3743129 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.70 60.0 5.08e-01 100.0% 68.6%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.70 51.0 5.46e-01 78.0% 100.0%
3225229 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 58.0 3.78e-01 100.0% 21.2%
4668787 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.70 62.0 4.03e-01 100.0% 35.4%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.70 53.0 4.23e-01 81.4% 49.6%
5045206 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 59.0 3.49e-01 94.9% 87.8%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 63.0 4.05e-01 100.0% 22.8%
4151176 5.1.4.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sortilin-Vps10 0.69 60.0 3.73e-01 96.6% 37.6%
5039683 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 60.0 3.64e-01 98.3% 43.8%
3214923 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 61.0 4.21e-01 100.0% 29.7%
4994580 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 59.0 3.52e-01 98.3% 90.4%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.69 60.0 4.13e-01 100.0% 72.4%
3957000 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 55.0 3.29e-01 89.8% 96.6%
None 0.68 60.0 3.46e-01 100.0% 26.9%
4977860 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 52.0 3.17e-01 84.7% 96.8%
3987370 219.1.1.73 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4300 0.67 57.0 3.86e-01 100.0% 31.0%
2900234 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 57.0 3.60e-01 94.9% 67.1%
5042888 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 58.0 3.39e-01 98.3% 93.2%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.67 52.0 4.08e-01 93.2% 39.2%
3820829 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.67 55.0 3.48e-01 91.5% 72.1%
5041234 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.67 50.0 5.06e-01 93.2% 81.7%
5019409 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.66 57.0 3.60e-01 100.0% 43.1%
4946341 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 55.0 3.65e-01 94.9% 44.9%
3891571 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.64 54.0 3.30e-01 98.3% 25.8%
3736971 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.64 54.0 3.26e-01 93.2% 54.3%
5040009 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.64 54.0 3.37e-01 96.6% 76.2%
3221612 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.63 52.0 3.52e-01 91.5% 28.4%
3435896 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 53.0 3.40e-01 100.0% 36.8%
4958733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 53.0 4.85e-01 100.0% 92.5%
1906032 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 53.0 3.85e-01 100.0% 37.9%
3949359 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.60 50.0 3.11e-01 100.0% 45.8%
3218150 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.60 44.0 3.21e-01 84.7% 91.3%
2413833 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.60 51.0 4.08e-01 100.0% 70.3%
5014198 5.1.4.670 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29948 0.59 49.0 3.11e-01 100.0% 42.5%
3952398 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 42.0 2.80e-01 81.4% 24.8%
3388732 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.58 47.0 4.22e-01 98.3% 63.5%
3836621 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.56 48.0 3.74e-01 98.3% 82.9%
4928691 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 46.0 3.92e-01 93.2% 90.0%
3684031 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.56 42.0 2.87e-01 86.4% 19.2%
3942940 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 48.0 4.06e-01 98.3% 95.0%
3623430 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.54 48.0 3.50e-01 100.0% 98.1%
5052790 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 42.0 3.25e-01 93.2% 96.0%
4210311 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 44.0 3.71e-01 98.3% 89.8%
4929594 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 44.0 3.83e-01 98.3% 100.0%
3596855 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.50 41.0 3.25e-01 100.0% 84.1%