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MN284896.1__QFP94898.1__SEA_OHMYWARD_16__00016

Bact-Vir

MN284896.1__QFP94898.1__SEA_OHMYWARD_16__00016

Identity

Accession:
MN284896 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kenoshavirus› Gordonia_phage_OhMyWard

TaxID: 2652414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-183
PDB
Domain cluster: rep: MT310852.1__QJD49729.1__SEA_CLUBPENGUIN_5__00005__D26-178
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13563.13 best 2_5_RNA_ligase2 28.6 1.90e-06 75.8% 81.6%
D2 high residues 225-355
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 39.0 4.55e-01 80.2% 92.1%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.61 23.0 3.81e-01 90.1% 100.0%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.61 42.0 4.17e-01 70.2% 100.0%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 37.0 4.30e-01 90.8% 89.0%
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 49.0 3.82e-01 91.6% 74.9%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 21.0 2.85e-01 77.9% 59.7%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 39.0 3.00e-01 74.0% 79.0%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 21.0 2.88e-01 88.5% 71.2%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 45.0 4.33e-01 93.9% 86.8%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 45.0 4.25e-01 100.0% 89.6%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 38.0 3.09e-01 96.2% 41.7%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 24.0 3.28e-01 88.5% 92.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4424313 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.63 42.0 4.73e-01 90.8% 89.0%
3286789 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 47.0 4.75e-01 77.9% 96.9%
4331578 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.62 42.0 4.67e-01 91.6% 86.7%
3285561 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 44.0 4.71e-01 90.8% 85.5%
3291492 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.62 43.0 4.64e-01 89.3% 85.5%
5082784 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 40.0 4.66e-01 89.3% 95.6%
4382051 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.61 43.0 4.58e-01 91.6% 83.5%
4444078 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.60 41.0 4.38e-01 91.6% 80.9%
4202460 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.59 38.0 4.42e-01 87.0% 93.3%
None — 0.59 40.0 4.29e-01 90.8% 81.8%
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 28.0 3.34e-01 90.8% 67.1%
3172478 708.1.1.30 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF30069, PF30070 0.57 34.0 3.14e-01 92.4% 44.8%
4682108 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.57 33.0 3.98e-01 79.4% 87.1%
3995627 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 27.0 3.24e-01 90.1% 64.7%
4170432 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.56 37.0 3.79e-01 89.3% 69.6%
3734507 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.51 39.0 2.83e-01 90.8% 27.5%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.51 35.0 3.48e-01 70.2% 85.0%
3437546 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.51 26.0 3.18e-01 98.5% 77.5%
4865228 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.51 26.0 3.01e-01 93.1% 66.0%
4355722 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 35.0 4.02e-01 80.9% 98.9%
4263663 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 35.0 3.31e-01 82.4% 58.7%