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MN284902.1__QFP95469.1__SEA_MAKAI_78__00078

Bact-Vir

MN284902.1__QFP95469.1__SEA_MAKAI_78__00078

Identity

Accession:
MN284902 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-66
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.75 65.0 4.80e-01 95.2% 53.2%
3p3lA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.70 49.0 2.96e-01 73.0% 26.6%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.70 58.0 5.44e-01 93.7% 75.3%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.70 53.0 4.79e-01 82.5% 69.0%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.69 50.0 3.76e-01 76.2% 55.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 56.0 4.81e-01 90.5% 63.1%
2kwpA00 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.68 57.0 4.60e-01 98.4% 97.7%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 46.0 4.55e-01 87.3% 68.2%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 50.0 4.34e-01 81.0% 59.2%
1ixkA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.66 39.0 3.34e-01 79.4% 35.2%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 51.0 3.56e-01 87.3% 92.6%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.65 51.0 5.26e-01 93.7% 96.7%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.64 53.0 4.62e-01 96.8% 60.2%
1y1aA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 54.0 4.80e-01 98.4% 100.0%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.63 53.0 4.95e-01 96.8% 75.9%
2kzcA00 1.10.790.20 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 0.63 48.0 4.39e-01 84.1% 63.5%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 52.0 3.82e-01 98.4% 37.1%
3smvA02 1.10.150.750 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 46.0 4.41e-01 87.3% 80.5%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.59 40.0 4.06e-01 73.0% 70.3%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.58 47.0 4.79e-01 100.0% 98.3%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 44.0 2.73e-01 84.1% 43.1%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 41.0 3.90e-01 77.8% 79.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 46.0 4.61e-01 92.1% 88.1%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 41.0 4.39e-01 82.5% 90.9%
1l5aA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 46.0 3.36e-01 96.8% 39.3%
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 3.35e-01 74.6% 73.1%
2xuvB00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.55 38.0 3.77e-01 74.6% 70.4%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 43.0 3.83e-01 87.3% 59.6%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.55 38.0 3.17e-01 76.2% 43.2%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 43.0 3.36e-01 88.9% 56.1%
2hpiA03 1.10.10.1600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain 0.53 40.0 3.91e-01 87.3% 74.6%
3um7B01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 3.21e-01 71.4% 68.0%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 44.0 3.72e-01 95.2% 54.0%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.23e-01 93.7% 65.7%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.53 42.0 3.03e-01 92.1% 70.0%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.53 41.0 3.70e-01 87.3% 68.1%
2jgpA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 45.0 3.08e-01 98.4% 39.9%
5hpfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 41.0 3.02e-01 88.9% 34.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 41.0 3.83e-01 92.1% 84.5%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.49e-01 82.5% 78.8%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.50 44.0 2.95e-01 100.0% 46.9%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.50 37.0 3.31e-01 87.3% 68.5%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 36.0 2.87e-01 76.2% 77.3%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 39.0 2.97e-01 90.5% 65.1%
2hnhA03 1.10.10.1600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain 0.50 37.0 3.57e-01 84.1% 73.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032105 1166.1.1.1 alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.77 59.0 4.24e-01 85.7% 29.4%
4968425 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.76 61.0 5.93e-01 87.3% 84.3%
4936966 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 63.0 6.14e-01 93.7% 87.1%
5078258 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.73 51.0 3.33e-01 73.0% 21.5%
4955004 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.73 57.0 5.83e-01 85.7% 96.7%
3624123 108.1.1.101 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.73 60.0 5.78e-01 88.9% 81.4%
5064035 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.73 57.0 5.84e-01 85.7% 96.7%
3791538 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 58.0 4.85e-01 88.9% 53.6%
3796793 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.72 58.0 5.41e-01 88.9% 73.8%
5030243 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 54.0 5.57e-01 81.0% 100.0%
5079736 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.71 55.0 5.17e-01 82.5% 81.3%
4030988 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.71 57.0 5.42e-01 87.3% 86.7%
4423693 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.70 50.0 5.30e-01 82.5% 89.1%
3297509 148.1.3.318 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 0.69 57.0 5.52e-01 92.1% 84.3%
3229657 148.1.3.27 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 0.69 62.0 5.73e-01 100.0% 82.5%
3269328 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 56.0 3.43e-01 93.7% 14.4%
3417644 105.1.1.83 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › Sulfate_transp 0.69 58.0 4.02e-01 93.7% 35.2%
4490066 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.69 53.0 4.76e-01 87.3% 60.0%
5056423 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.67 51.0 4.66e-01 82.5% 70.6%
3272220 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 50.0 4.34e-01 85.7% 88.6%
4115978 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.66 53.0 5.31e-01 92.1% 90.8%
3413518 592.1.1.7 alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 0.65 50.0 4.74e-01 87.3% 69.3%
3914757 592.1.1.7 alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 0.64 47.0 4.59e-01 82.5% 70.0%
4296281 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.64 47.0 3.16e-01 81.0% 23.3%
157344 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.64 44.0 2.70e-01 73.0% 51.4%
4992168 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 49.0 4.49e-01 95.2% 62.2%
5057376 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.63 45.0 4.11e-01 76.2% 88.2%
None 0.63 54.0 3.22e-01 100.0% 34.8%
4633347 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.62 45.0 4.93e-01 77.8% 98.0%
4028059 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 46.0 4.83e-01 79.4% 92.7%
3503611 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 45.0 4.10e-01 82.5% 54.7%
3870903 103.1.1.53 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.61 49.0 4.99e-01 92.1% 96.7%
4155643 3788.1.1.12 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › CCD48 0.61 47.0 4.55e-01 84.1% 85.7%
3538104 7061.1.1.1 few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.61 49.0 4.65e-01 90.5% 78.7%
4015710 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 47.0 4.36e-01 92.1% 88.2%
4032282 101.1.4.29 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF2316 0.57 43.0 3.93e-01 81.0% 80.0%
4597624 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.57 44.0 3.38e-01 87.3% 36.3%
5052181 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.56 45.0 3.24e-01 92.1% 64.9%
4015540 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 41.0 4.46e-01 82.5% 98.0%
4507097 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.56 47.0 3.64e-01 95.2% 66.2%
3982835 2007.1.3.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 0.56 44.0 3.03e-01 87.3% 88.0%
4064277 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 45.0 4.50e-01 90.5% 89.2%
3229806 6157.1.1.1 alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.55 41.0 3.45e-01 82.5% 81.7%
4036498 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.55 42.0 3.38e-01 84.1% 68.5%
4553544 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.55 43.0 3.14e-01 90.5% 30.3%
4441062 3962.1.1.3 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › YtxK_like 0.54 39.0 3.53e-01 76.2% 70.6%
4564509 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.54 43.0 4.44e-01 92.1% 93.3%
4315777 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.54 42.0 3.34e-01 87.3% 40.0%
4261248 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.60e-01 100.0% 28.4%
4932779 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 38.0 3.47e-01 81.0% 75.8%
3208986 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.52 43.0 2.90e-01 100.0% 25.3%
4288189 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.52 39.0 3.94e-01 88.9% 80.0%
4251581 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.52 39.0 3.94e-01 88.9% 80.0%
3425084 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.73e-01 93.7% 78.9%