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MN310543.1__QFG04713.1__SEA_CHICKENKING_44__00043
Bact-VirMN310543.1__QFG04713.1__SEA_CHICKENKING_44__00043
Identity
- Accession:
- MN310543 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 2652406
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-90
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 31.0 | 3.50e-01 | 85.2% | 54.0% |
| 1c48A00 | 2.40.50.70 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 35.0 | 3.74e-01 | 100.0% | 59.4% |
| 3nojA01 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.61 | 41.0 | 3.39e-01 | 70.4% | 100.0% |
| 3k4iA01 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.59 | 40.0 | 3.24e-01 | 70.4% | 93.8% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 39.0 | 4.23e-01 | 86.4% | 83.6% |
| 2v0cA03 | 2.30.210.10 | Mainly Beta › Roll › Leucyl-tRNA synthetase, domain 3 › Leucyl-tRNA synthetase, domain 3 | 0.56 | 37.0 | 4.21e-01 | 100.0% | 96.5% |
| 5ir2A00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.55 | 48.0 | 3.57e-01 | 100.0% | 78.8% |
| 3ey7A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 46.0 | 4.01e-01 | 91.4% | 91.7% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 47.0 | 3.44e-01 | 100.0% | 93.2% |
| 6p2uA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.53 | 34.0 | 3.88e-01 | 70.4% | 100.0% |
| 1yloA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 45.0 | 3.24e-01 | 100.0% | 90.9% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.50e-01 | 85.2% | 65.9% |
| 1qtoA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 43.0 | 3.83e-01 | 93.8% | 73.8% |
| 2i0zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.20e-01 | 100.0% | 40.0% |
| 2pt7G02 | 3.30.1370.180 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 29.0 | 3.12e-01 | 98.8% | 64.2% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.51 | 44.0 | 3.28e-01 | 100.0% | 82.8% |
| 3ajdA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.51 | 31.0 | 3.47e-01 | 85.2% | 80.0% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 31.0 | 3.32e-01 | 86.4% | 70.0% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.41e-01 | 100.0% | 68.3% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 42.0 | 3.21e-01 | 96.3% | 67.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1680485 | 4963.1.2.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol | 0.60 | 54.0 | 3.52e-01 | 100.0% | 24.9% |
| 4953913 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 28.0 | 3.24e-01 | 85.2% | 60.0% |
| 5011354 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.56 | 43.0 | 3.27e-01 | 81.5% | 59.5% |
| 2841967 | 5089.1.1.7 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › PF26164 | 0.54 | 38.0 | 2.72e-01 | 74.1% | 51.7% |
| 5035614 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 32.0 | 3.58e-01 | 86.4% | 80.0% |
| 1518821 | 304.7.1.8 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › ORF_2_N | 0.53 | 33.0 | 2.82e-01 | 87.7% | 38.5% |
| 4952760 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.52 | 45.0 | 3.51e-01 | 100.0% | 87.4% |
| 3972825 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.52 | 30.0 | 3.35e-01 | 84.0% | 75.0% |
| 957543 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.51 | 45.0 | 3.29e-01 | 100.0% | 82.8% |
| 1710232 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.51 | 31.0 | 3.32e-01 | 86.4% | 71.6% |
| 4073616 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 31.0 | 3.40e-01 | 86.4% | 75.4% |
| 5078972 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.51 | 44.0 | 4.36e-01 | 95.1% | 96.5% |
| 5038997 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.51 | 30.0 | 3.28e-01 | 86.4% | 70.8% |
| 4936721 | 304.24.1.37 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C | 0.51 | 31.0 | 3.44e-01 | 85.2% | 76.9% |
| 3280833 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.50 | 30.0 | 3.46e-01 | 87.7% | 81.7% |
| 4528478 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.50 | 30.0 | 3.46e-01 | 87.7% | 87.3% |
D2
medium
residues 127-260
Domain cluster:
rep: NC_028805.1__YP_009199145.1__AVV11_gp107__00084__D66-195
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01503.23 best | PRA-PH | 57.3 | 2.30e-15 | 62.7% | 100.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.80 | 76.0 | 7.47e-01 | 100.0% | 93.0% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.79 | 52.0 | 6.30e-01 | 70.9% | 98.9% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.71 | 50.0 | 5.59e-01 | 73.1% | 96.3% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.70 | 56.0 | 6.09e-01 | 93.3% | 100.0% |
| 2rfpA00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.56 | 54.0 | 4.89e-01 | 100.0% | 96.4% |
| 1oj7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.53 | 41.0 | 3.65e-01 | 83.6% | 82.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945676 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.87 | 55.0 | 6.80e-01 | 91.8% | 95.6% |
| 1141813 | 159.1.2.2 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG | 0.86 | 54.0 | 6.39e-01 | 91.8% | 89.4% |
| 5038235 | 159.1.1.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH | 0.86 | 60.0 | 6.93e-01 | 85.1% | 96.0% |
| 5061102 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.85 | 61.0 | 7.02e-01 | 87.3% | 98.0% |
| 1290191 | 159.1.3.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH | 0.81 | 78.0 | 7.52e-01 | 100.0% | 90.5% |
| 4997929 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.80 | 53.0 | 6.07e-01 | 74.6% | 89.0% |
| 4162803 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.77 | 54.0 | 6.06e-01 | 83.6% | 90.5% |
| 4104683 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.74 | 53.0 | 5.98e-01 | 90.3% | 94.3% |
| 4562960 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.74 | 53.0 | 5.92e-01 | 90.3% | 93.3% |
| 3327997 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.70 | 52.0 | 5.64e-01 | 93.3% | 89.6% |
| 3943200 | 159.1.4.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase-related › PRA-PH | 0.68 | 64.0 | 5.04e-01 | 100.0% | 95.0% |
| 3973713 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.66 | 60.0 | 4.66e-01 | 96.3% | 48.5% |
| 4290583 | 159.1.1.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH | 0.66 | 53.0 | 5.71e-01 | 93.3% | 98.3% |
| 4955796 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.62 | 37.0 | 3.86e-01 | 100.0% | 64.0% |
| 3193336 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.59 | 33.0 | 3.50e-01 | 85.1% | 60.8% |
| 3208722 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.57 | 33.0 | 3.69e-01 | 92.5% | 70.9% |
| 146265 | 159.1.3.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH | 0.56 | 53.0 | 4.88e-01 | 100.0% | 96.4% |
| 3787587 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.56 | 34.0 | 3.92e-01 | 94.0% | 82.0% |
| 3615419 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.54 | 47.0 | 3.50e-01 | 92.5% | 98.8% |
| 4540558 | 109.4.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K | 0.52 | 39.0 | 3.34e-01 | 79.1% | 60.0% |