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MN310543.1__QFG04727.1__SEA_CHICKENKING_58__00057

Bact-Vir

MN310543.1__QFG04727.1__SEA_CHICKENKING_58__00057

Identity

Accession:
MN310543 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ilzatvirus› Microbacterium_phage_ChickenKing

TaxID: 2652406

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-118
PDB
Domain cluster: rep: KY000079.2__APD20214.1__AM24_006__00006__D3-103
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 39.0 4.37e-01 98.2% 71.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 39.0 4.35e-01 98.2% 71.8%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 39.0 4.21e-01 98.2% 68.1%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 36.0 4.26e-01 97.3% 76.3%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 36.0 4.09e-01 98.2% 72.8%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 35.0 4.02e-01 98.2% 72.2%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.64 37.0 4.39e-01 98.2% 85.3%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 35.0 3.93e-01 97.3% 72.0%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.62 42.0 4.48e-01 97.3% 80.2%
1jj2L00 3.40.1120.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal protein L15e › Ribosomal protein L15 0.61 43.0 3.55e-01 84.7% 41.8%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 35.0 3.78e-01 98.2% 66.7%
2f06A00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.61 34.0 3.19e-01 96.4% 41.7%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 36.0 3.79e-01 96.4% 67.0%
4tpvA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 40.0 3.40e-01 100.0% 45.1%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.56 33.0 3.67e-01 98.2% 75.3%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.55 35.0 3.36e-01 97.3% 53.0%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 31.0 3.40e-01 85.6% 67.4%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 31.0 2.89e-01 96.4% 41.8%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.64e-01 100.0% 69.7%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.11e-01 98.2% 83.3%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 4.05e-01 99.1% 84.1%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 27.0 2.99e-01 87.4% 61.6%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.52 38.0 3.59e-01 78.4% 92.1%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.52 35.0 3.47e-01 98.2% 65.0%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 27.0 3.00e-01 87.4% 62.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988966 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.71 37.0 4.40e-01 98.2% 73.3%
3312923 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 41.0 4.43e-01 98.2% 67.4%
3803422 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.70 38.0 4.65e-01 98.2% 84.3%
5029360 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.69 38.0 4.71e-01 82.9% 89.2%
3367471 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.69 40.0 4.76e-01 98.2% 88.6%
3675774 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.68 40.0 4.47e-01 98.2% 75.3%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.68 40.0 4.03e-01 98.2% 58.2%
3829402 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 41.0 4.65e-01 98.2% 82.5%
3816023 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.67 39.0 4.48e-01 98.2% 78.8%
4105300 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.67 40.0 4.28e-01 96.4% 68.4%
3679423 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 39.0 4.64e-01 98.2% 85.3%
3284562 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.67 37.0 4.16e-01 98.2% 69.4%
4955435 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 36.0 4.26e-01 98.2% 77.3%
3824912 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 38.0 4.32e-01 98.2% 76.2%
3348806 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 39.0 4.57e-01 98.2% 85.3%
4321703 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.66 39.0 4.18e-01 96.4% 68.4%
4119510 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.65 39.0 4.08e-01 96.4% 65.0%
4547137 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.65 38.0 4.32e-01 96.4% 76.5%
3307398 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.65 41.0 4.14e-01 98.2% 63.6%
4087300 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.65 38.0 3.98e-01 96.4% 61.9%
4629403 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 37.0 4.03e-01 96.4% 67.0%
4342212 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 38.0 4.10e-01 96.4% 68.4%
3840001 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 38.0 4.27e-01 96.4% 76.5%
4929473 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.64 38.0 4.23e-01 98.2% 75.3%
4175826 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.64 32.0 4.21e-01 82.0% 84.6%
3341034 304.8.1.57 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.64 37.0 3.77e-01 98.2% 56.4%
4196383 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 38.0 4.00e-01 96.4% 65.0%
4074612 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 38.0 4.06e-01 96.4% 68.4%
4274127 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 38.0 4.00e-01 96.4% 65.7%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 39.0 3.92e-01 99.1% 59.1%
11195 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.63 43.0 4.66e-01 71.2% 83.7%
3829359 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 41.0 4.59e-01 98.2% 87.1%
4371656 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.63 37.0 4.00e-01 96.4% 68.4%
3641835 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.63 36.0 3.76e-01 98.2% 61.0%
3285170 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.63 36.0 3.97e-01 98.2% 71.8%
4061575 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.62 37.0 4.05e-01 96.4% 72.2%
3927497 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.61 40.0 4.62e-01 72.1% 92.5%
3618372 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.61 43.0 4.25e-01 73.0% 93.3%
4982715 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.60 41.0 2.88e-01 82.0% 21.2%
5055367 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.60 43.0 4.58e-01 91.9% 86.3%
4175825 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.59 32.0 3.93e-01 82.9% 87.7%
3393619 284.4.1.2 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 0.58 28.0 3.81e-01 73.0% 98.0%
3367405 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 39.0 3.95e-01 98.2% 69.1%
3171970 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.58 37.0 4.00e-01 97.3% 77.8%
4034394 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 38.0 3.90e-01 70.3% 68.2%
3605297 306.10.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.57 43.0 4.21e-01 82.0% 98.4%
3308868 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 39.0 4.00e-01 98.2% 78.1%
3285931 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 37.0 3.71e-01 93.7% 67.8%
4265803 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.53 37.0 3.54e-01 98.2% 61.5%
3962778 304.31.1.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.53 35.0 3.39e-01 98.2% 59.2%
4994922 304.31.1.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.53 35.0 3.53e-01 98.2% 67.3%
3783593 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.52 42.0 2.99e-01 87.4% 86.9%
3296933 304.31.1.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.51 34.0 3.37e-01 98.2% 63.3%
3418409 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 39.0 2.86e-01 82.9% 36.9%
3955040 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.50 39.0 2.99e-01 83.8% 53.8%
3606469 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.73e-01 84.7% 39.2%
3490058 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 38.0 2.69e-01 81.1% 71.0%