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MN313256.1__QGJ84340.1__X__00054

Bact-Vir

MN313256.1__QGJ84340.1__X__00054

Identity

Accession:
MN313256 ↗
Kingdom:
phage

Quality

96.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_XCL1123

TaxID: 2655003

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-39
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.74 50.0 3.30e-01 100.0% 17.1%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.72 54.0 3.70e-01 89.7% 40.5%
1rc2A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.66 57.0 3.51e-01 100.0% 35.5%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.65 54.0 3.40e-01 100.0% 17.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 55.0 4.43e-01 100.0% 53.8%
1miwA03 1.20.58.560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 51.0 4.00e-01 100.0% 40.0%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.63 51.0 3.84e-01 100.0% 63.4%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.62 45.0 3.96e-01 79.5% 52.5%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 51.0 4.38e-01 94.9% 76.9%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 52.0 4.77e-01 100.0% 72.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 50.0 3.60e-01 100.0% 30.2%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 3.41e-01 92.3% 64.6%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.13e-01 100.0% 50.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 3.95e-01 100.0% 56.3%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.34e-01 100.0% 66.1%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.33e-01 100.0% 77.8%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.58 49.0 4.44e-01 100.0% 73.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 47.0 4.25e-01 100.0% 66.1%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 43.0 3.78e-01 89.7% 50.7%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 47.0 3.00e-01 97.4% 17.0%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 46.0 3.90e-01 94.9% 76.5%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.61e-01 100.0% 51.5%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 44.0 3.72e-01 100.0% 56.8%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.53 43.0 4.33e-01 97.4% 97.6%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 41.0 3.42e-01 100.0% 65.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3581419 6028.1.1.0 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.85 70.0 6.96e-01 100.0% 87.5%
3542362 389.1.1.127 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO 0.77 67.0 6.20e-01 100.0% 78.0%
1240663 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.75 65.0 4.42e-01 100.0% 27.5%
4165646 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.70 55.0 5.00e-01 100.0% 63.6%
3505559 101.1.6.19 ↗ alpha arrays › HTH › HTH › TrpR › PAX 0.65 55.0 4.42e-01 100.0% 49.3%
3789627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 4.63e-01 100.0% 56.9%
3249557 195.1.1.3 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.65 54.0 3.75e-01 100.0% 30.0%
4079860 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 48.0 4.34e-01 100.0% 56.7%
4952293 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.64 52.0 5.22e-01 100.0% 90.0%
3925603 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 53.0 4.90e-01 100.0% 74.0%
4987653 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.63 55.0 5.23e-01 100.0% 84.4%
3250170 3614.1.1.0 ↗ alpha arrays › T4 RNA ligase › T4 RNA ligase › T4 RNA ligase (Rnl1) C-terminal domain 0.63 49.0 3.54e-01 100.0% 28.6%
4143289 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 52.0 4.69e-01 100.0% 67.3%
4510105 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 5.16e-01 100.0% 92.5%
3932988 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.64e-01 100.0% 67.3%
3590885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.28e-01 100.0% 52.9%
5028266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.52e-01 100.0% 62.7%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.62 46.0 4.53e-01 100.0% 75.6%
4133453 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.66e-01 100.0% 70.9%
3797530 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 50.0 4.25e-01 100.0% 55.4%
3410877 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 4.22e-01 100.0% 52.9%
3590732 101.1.1.364 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.60 46.0 4.49e-01 100.0% 77.8%
4302460 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.58 48.0 3.18e-01 94.9% 30.6%
3193224 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.55 44.0 2.66e-01 92.3% 25.7%
3951183 573.1.1.0 ↗ alpha duplicates or obligate multimers › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a 0.54 42.0 4.23e-01 100.0% 90.0%