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MN329673.1__QFP94082.1__SEA_JABBERWOCKY_27__00027
Bact-VirMN329673.1__QFP94082.1__SEA_JABBERWOCKY_27__00027
Identity
- Accession:
- MN329673 ↗
- Kingdom:
- phage
Quality
65.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Vividuovirus›
Gordonia_phage_Jabberwocky
TaxID: 2653273
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 72-124
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.76 | 60.0 | 3.59e-01 | 84.9% | 13.7% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.65 | 49.0 | 4.83e-01 | 83.0% | 75.9% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 44.0 | 4.05e-01 | 73.6% | 63.0% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.62 | 48.0 | 4.08e-01 | 86.8% | 91.2% |
| 4p55B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 3.89e-01 | 90.6% | 99.0% |
| 1qlsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 42.0 | 3.59e-01 | 79.2% | 73.7% |
| 4pcwC00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 45.0 | 3.81e-01 | 86.8% | 76.9% |
| 1ze0A02 | 1.10.4070.10 | Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain | 0.57 | 40.0 | 3.55e-01 | 73.6% | 66.7% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.57 | 43.0 | 3.94e-01 | 86.8% | 76.3% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 38.0 | 3.05e-01 | 71.7% | 75.8% |
| 1ofcX04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 44.0 | 3.74e-01 | 92.5% | 59.6% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.37e-01 | 92.5% | 50.0% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.53 | 43.0 | 3.29e-01 | 96.2% | 49.7% |
| 3u4tB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 40.0 | 2.63e-01 | 83.0% | 28.8% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 44.0 | 3.41e-01 | 100.0% | 78.6% |
| 5jolA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 38.0 | 3.45e-01 | 84.9% | 78.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3467974 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.74 | 52.0 | 5.73e-01 | 79.2% | 100.0% |
| 3429087 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.70 | 59.0 | 4.42e-01 | 92.5% | 62.4% |
| 3258239 | 626.1.1.0 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) | 0.69 | 50.0 | 2.76e-01 | 79.2% | 5.2% |
| 3629936 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 48.0 | 4.15e-01 | 77.4% | 77.6% |
| 3490393 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.65 | 47.0 | 4.12e-01 | 77.4% | 80.0% |
| 3265616 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 45.0 | 3.86e-01 | 77.4% | 71.1% |
| 3878587 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 47.0 | 4.05e-01 | 81.1% | 82.4% |
| 3251411 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 43.0 | 4.10e-01 | 73.6% | 86.2% |
| 3275054 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.61 | 46.0 | 4.13e-01 | 81.1% | 85.3% |
| 3264694 | 108.1.1.113 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6 | 0.60 | 45.0 | 3.90e-01 | 84.9% | 73.3% |
| 3755357 | 108.1.1.74 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 | 0.59 | 45.0 | 3.92e-01 | 84.9% | 77.6% |
| 3987122 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.58 | 42.0 | 3.80e-01 | 81.1% | 61.3% |
| 3453546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 41.0 | 3.85e-01 | 71.7% | 60.0% |
| 3488989 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.57 | 39.0 | 3.67e-01 | 73.6% | 90.0% |
| 3707645 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 43.0 | 3.66e-01 | 86.8% | 77.9% |
| 3799743 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.55 | 39.0 | 3.57e-01 | 77.4% | 80.0% |
| 3426642 | 375.1.1.96 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY | 0.55 | 39.0 | 4.01e-01 | 86.8% | 78.0% |
| 4210808 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.55 | 41.0 | 3.88e-01 | 81.1% | 95.4% |
| 3846876 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.54 | 40.0 | 3.64e-01 | 81.1% | 80.0% |
| 4889887 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.54 | 39.0 | 2.97e-01 | 81.1% | 65.8% |
| 3886806 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.54 | 42.0 | 3.59e-01 | 86.8% | 77.8% |
| 3546144 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.54 | 39.0 | 3.93e-01 | 94.3% | 76.4% |
| 3820942 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.53 | 41.0 | 3.71e-01 | 83.0% | 85.3% |
| 3488460 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.53 | 40.0 | 3.63e-01 | 83.0% | 80.0% |
| 3491818 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.53 | 41.0 | 3.43e-01 | 84.9% | 87.4% |
| 3829503 | 108.1.1.112 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5 | 0.53 | 40.0 | 3.60e-01 | 83.0% | 84.0% |
| 1007202 | 108.1.1.2 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1,S_100 | 0.52 | 41.0 | 3.42e-01 | 92.5% | 47.6% |
| 3176081 | 101.1.16.1 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 | 0.52 | 41.0 | 3.60e-01 | 90.6% | 90.4% |
| 3998656 | 101.1.16.1 ↗ | alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 | 0.51 | 40.0 | 3.29e-01 | 92.5% | 62.7% |