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MN334766.1__QFP93246.1__X__00148

Bact-Vir

MN334766.1__QFP93246.1__X__00148

Identity

Accession:
MN334766 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Serratia_phage_PCH45

TaxID: 2608368

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-76
PDB
Domain cluster: rep: OK094664.1__UEP18789.1__vBSbQDWS_55__00055__D7-79
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 57.0 5.50e-01 100.0% 64.9%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 5.60e-01 100.0% 65.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.68 45.0 4.09e-01 100.0% 49.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.67 52.0 4.45e-01 100.0% 52.3%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 59.0 5.84e-01 100.0% 98.6%
1vwxZ00 2.30.30.770 Mainly Beta › Roll › SH3 type barrels. › 0.63 59.0 4.62e-01 100.0% 54.8%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 50.0 4.17e-01 100.0% 54.9%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 48.0 4.21e-01 94.2% 89.3%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 2.93e-01 73.9% 89.4%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 46.0 3.68e-01 100.0% 84.4%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.80e-01 89.9% 73.4%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.74e-01 84.1% 87.9%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.53 49.0 4.15e-01 100.0% 73.8%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.76e-01 75.4% 98.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.46e-01 88.4% 89.1%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.47e-01 87.0% 91.3%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.50 43.0 3.45e-01 100.0% 57.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021079 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.75 66.0 4.64e-01 100.0% 33.3%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.73 64.0 5.92e-01 100.0% 76.5%
3290706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.40e-01 98.6% 87.3%
3788802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 4.67e-01 100.0% 68.3%
3677709 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.65 60.0 5.74e-01 100.0% 88.7%
3623141 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.64 58.0 5.11e-01 100.0% 82.0%
5029725 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 50.0 3.77e-01 88.4% 98.8%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 56.0 5.32e-01 100.0% 92.5%
4095581 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.60 48.0 4.57e-01 92.8% 72.9%
3783617 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.60 54.0 5.15e-01 100.0% 88.7%
4504920 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.55 49.0 4.34e-01 100.0% 77.8%
4264144 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 43.0 3.72e-01 87.0% 88.6%
3712376 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.53 42.0 3.49e-01 87.0% 85.0%
3701262 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.52 42.0 3.41e-01 88.4% 87.7%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 44.0 3.74e-01 92.8% 94.5%
3707760 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.52 42.0 3.49e-01 88.4% 89.2%
5050807 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 35.0 2.76e-01 73.9% 73.1%
3576101 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 39.0 3.04e-01 95.7% 38.0%
3421521 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 41.0 3.41e-01 88.4% 92.8%
317 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.51 39.0 3.46e-01 88.4% 89.1%
3667392 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 40.0 3.42e-01 88.4% 96.5%