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MN340231.1__QGF19913.1__X__00015

Bact-Vir

MN340231.1__QGF19913.1__X__00015

Identity

Accession:
MN340231 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Escherichia_phage_phiv205-1

TaxID: 2663260

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13274.12 best SocA_Panacea 48.6 2.20e-12 66.7% 40.4%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 43.0 4.00e-01 91.7% 54.0%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 48.0 4.08e-01 98.6% 48.0%
4zo4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.40e-01 80.6% 46.3%
6bsbB00 6.10.140.600 Special › Helix non-globular › Helix Hairpins › 0.62 38.0 4.25e-01 90.3% 87.8%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.61 51.0 5.01e-01 93.1% 94.9%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 44.0 3.29e-01 90.3% 30.8%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 51.0 3.65e-01 94.4% 64.5%
1zcaA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.58 41.0 3.47e-01 73.6% 86.1%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.05e-01 100.0% 75.3%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 3.18e-01 87.5% 63.2%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.27e-01 100.0% 40.6%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.14e-01 100.0% 90.0%
5uivA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.38e-01 98.6% 47.6%
2ondA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.02e-01 93.1% 22.1%
4q9aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 44.0 3.22e-01 94.4% 67.6%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.54 40.0 3.46e-01 84.7% 97.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.25e-01 100.0% 43.4%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.53 45.0 3.84e-01 94.4% 75.4%
1q16B03 1.10.3650.10 Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like 0.53 41.0 4.04e-01 84.7% 81.8%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.89e-01 100.0% 87.7%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 3.28e-01 80.6% 71.5%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 40.0 2.90e-01 91.7% 45.3%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.42e-01 86.1% 58.9%
3dupA02 3.30.750.160 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.51 42.0 3.71e-01 91.7% 77.4%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.51 40.0 3.40e-01 84.7% 80.3%
2fnaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 3.05e-01 93.1% 45.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4558948 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.70 40.0 4.37e-01 97.2% 68.3%
5049281 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 5.31e-01 100.0% 72.0%
3691125 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.64 56.0 4.57e-01 98.6% 54.1%
3954637 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.62 55.0 4.95e-01 100.0% 75.0%
3958918 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.84e-01 100.0% 78.9%
4029578 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 50.0 4.33e-01 100.0% 58.5%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.59 42.0 4.04e-01 100.0% 64.3%
4994660 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.52e-01 100.0% 71.8%
5038669 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.58 43.0 3.77e-01 100.0% 51.3%
5019993 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 3.47e-01 100.0% 51.6%
3216428 5001.1.1.28 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Per1 0.57 46.0 3.14e-01 90.3% 47.7%
None — 0.57 41.0 3.29e-01 100.0% 37.9%
3953573 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.57 41.0 3.28e-01 100.0% 37.9%
4116764 101.1.2.840 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29821 0.56 48.0 4.15e-01 97.2% 86.1%
5020161 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.55 47.0 3.67e-01 97.2% 85.4%
5011994 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.55 39.0 3.29e-01 100.0% 42.3%
3934966 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 45.0 3.26e-01 94.4% 55.8%
3610967 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 43.0 3.74e-01 87.5% 80.9%
3972199 210.2.1.3 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.54 45.0 3.05e-01 94.4% 62.1%
3454431 108.1.1.129 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7874 0.54 44.0 4.12e-01 100.0% 72.2%
3627365 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.54 40.0 3.52e-01 80.6% 84.5%
4094443 313.1.1.1 ↗ a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C 0.53 45.0 3.83e-01 91.7% 72.2%
3670166 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 45.0 2.80e-01 95.8% 85.9%
3592842 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.52 44.0 3.41e-01 93.1% 66.3%
3968506 3859.1.1.0 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.52 39.0 3.48e-01 80.6% 67.6%
5067261 101.1.2.242 ↗ alpha arrays › HTH › HTH › winged helix domain › RepL 0.52 36.0 3.56e-01 100.0% 67.5%
4681324 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.51 44.0 2.89e-01 97.2% 27.2%
3534824 109.4.1.1786 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28582 0.51 42.0 2.42e-01 88.9% 32.9%
5040463 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 43.0 2.88e-01 95.8% 41.4%
3787128 109.4.1.654 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFB6 0.51 42.0 3.00e-01 94.4% 31.3%
3805402 221.4.1.24 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 0.50 41.0 2.75e-01 91.7% 27.1%
3210440 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.50 43.0 3.94e-01 97.2% 82.1%
5013283 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.51e-01 100.0% 72.0%