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MN369755.1__QGH79622.1__SEA_MINNIE_51__00051

Bact-Vir

MN369755.1__QGH79622.1__SEA_MINNIE_51__00051

Identity

Accession:
MN369755 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-114
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05443.18 best ROS_MUCR 27.6 3.70e-06 93.0% 43.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.70e-01 73.0% 70.9%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.50 35.0 3.29e-01 72.0% 88.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5069645 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.55 41.0 2.83e-01 79.0% 39.7%
5026719 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.53 39.0 3.05e-01 78.0% 66.4%
D2 high residues 164-233
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 54.0 6.73e-01 70.0% 100.0%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 6.04e-01 75.7% 89.8%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 55.0 6.17e-01 74.3% 100.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.76 56.0 4.84e-01 78.6% 56.0%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.31e-01 71.4% 93.5%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.21e-01 71.4% 77.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.73 58.0 4.73e-01 85.7% 53.2%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.33e-01 78.6% 82.9%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.66e-01 97.1% 84.5%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.31e-01 78.6% 92.4%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.02e-01 77.1% 50.0%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.07e-01 78.6% 93.1%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.93e-01 72.9% 93.9%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 48.0 4.72e-01 74.3% 68.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.67e-01 72.9% 76.9%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.93e-01 77.1% 83.6%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 48.0 4.82e-01 78.6% 72.9%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.09e-01 75.7% 88.9%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.30e-01 95.7% 80.9%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.67 47.0 4.03e-01 72.9% 50.9%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.25e-01 78.6% 91.9%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.67 54.0 4.82e-01 88.6% 81.2%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 47.0 5.00e-01 80.0% 85.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.85e-01 80.0% 37.9%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.31e-01 97.1% 84.1%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.46e-01 78.6% 64.5%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 5.03e-01 77.1% 93.7%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.90e-01 75.7% 88.9%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.66e-01 74.3% 80.3%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.03e-01 97.1% 84.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 3.74e-01 74.3% 43.5%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 3.83e-01 78.6% 47.9%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.21e-01 71.4% 64.4%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.19e-01 97.1% 90.1%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.01e-01 94.3% 81.4%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 5.14e-01 80.0% 93.4%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.64 41.0 4.74e-01 70.0% 100.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 43.0 4.19e-01 71.4% 63.2%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 3.87e-01 78.6% 45.7%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.89e-01 84.3% 83.3%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.54e-01 75.7% 92.4%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 41.0 4.25e-01 70.0% 73.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.56e-01 78.6% 52.5%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 46.0 3.39e-01 87.1% 36.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.55e-01 98.6% 72.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.09e-01 85.7% 90.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 59.0 7.36e-01 70.0% 100.0%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 58.0 7.29e-01 71.4% 100.0%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 58.0 6.58e-01 71.4% 92.7%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.84 60.0 6.76e-01 74.3% 100.0%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.80 60.0 6.65e-01 84.3% 100.0%
4610234 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.79 54.0 5.75e-01 70.0% 83.3%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 58.0 6.54e-01 81.4% 100.0%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.77 56.0 6.36e-01 77.1% 96.4%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.76 55.0 5.90e-01 74.3% 86.7%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 57.0 5.26e-01 84.3% 64.4%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.74 52.0 5.36e-01 72.9% 81.5%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 51.0 4.83e-01 72.9% 62.4%
5064868 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.73 54.0 5.00e-01 78.6% 72.2%
5019249 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 4.97e-01 75.7% 83.5%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.73 58.0 5.78e-01 85.7% 83.1%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 5.76e-01 81.4% 100.0%
5050966 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.71 52.0 4.68e-01 77.1% 58.9%
None 0.71 49.0 4.56e-01 74.3% 57.3%
3980686 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.71 47.0 5.35e-01 72.9% 96.0%
4654073 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.70 53.0 5.18e-01 80.0% 76.0%
3933366 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.69 49.0 4.97e-01 74.3% 77.1%
4009103 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.69 48.0 5.14e-01 75.7% 85.0%
3976262 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.68 51.0 4.34e-01 80.0% 54.8%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.54e-01 81.4% 96.7%
4603528 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.67 47.0 4.59e-01 81.4% 68.0%
4165105 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.62 50.0 4.82e-01 94.3% 83.5%
3279376 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.62 49.0 4.57e-01 92.9% 74.7%
1291586 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 46.0 3.73e-01 84.3% 46.8%
3977925 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 47.0 4.27e-01 90.0% 96.0%
D3 high residues 244-308
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oazA00 1.10.10.1930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 51.0 4.92e-01 75.4% 84.0%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 48.0 5.25e-01 75.4% 83.3%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 48.0 5.27e-01 70.8% 84.9%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 6.01e-01 96.9% 94.4%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 47.0 4.56e-01 70.8% 63.4%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 53.0 5.45e-01 86.2% 90.0%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.71e-01 72.3% 72.1%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 47.0 5.33e-01 75.4% 97.9%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 5.06e-01 70.8% 88.9%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 5.10e-01 95.4% 80.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 55.0 4.79e-01 93.8% 63.5%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 45.0 5.14e-01 80.0% 95.8%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.88e-01 80.0% 85.7%
1wxqA02 1.10.8.470 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 51.0 4.73e-01 93.8% 76.7%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 44.0 4.42e-01 76.9% 72.1%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 51.0 4.37e-01 93.8% 59.5%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.18e-01 80.0% 62.1%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.58e-01 80.0% 93.7%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 47.0 4.55e-01 86.2% 82.2%
2o2kA01 3.10.196.10 Alpha Beta › Roll › Cobalamin-dependent Methionine Synthase; domain 1 › Vitamin B12-dependent methionine synthase, activation domain 0.59 50.0 3.43e-01 95.4% 85.6%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 3.08e-01 84.6% 61.5%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 44.0 3.19e-01 81.5% 56.8%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.38e-01 92.3% 86.4%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.53 38.0 3.17e-01 76.9% 63.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058447 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 54.0 5.89e-01 73.8% 81.8%
3987779 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 60.0 5.35e-01 80.0% 71.1%
3777065 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.79 53.0 5.40e-01 70.8% 70.3%
3938920 101.1.1.397 alpha arrays › HTH › HTH › Three-helical HTH › PF30176 0.79 50.0 5.96e-01 73.8% 93.3%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 52.0 6.10e-01 78.5% 100.0%
3466087 101.1.1.253 alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.76 51.0 5.71e-01 70.8% 90.0%
3731371 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 5.58e-01 70.8% 83.6%
3970952 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 48.0 5.14e-01 73.8% 76.4%
3262509 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 51.0 4.55e-01 70.8% 53.3%
5030025 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 52.0 5.89e-01 75.4% 92.0%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 52.0 5.64e-01 73.8% 90.9%
185183 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.73 51.0 4.11e-01 73.8% 65.6%
4596898 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.73 55.0 5.14e-01 80.0% 65.0%
3993676 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.73 50.0 4.21e-01 70.8% 46.7%
3868763 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 49.0 5.32e-01 70.8% 81.8%
3385907 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.95e-01 80.0% 98.2%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.73 53.0 5.78e-01 78.5% 90.9%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.73 54.0 4.88e-01 81.5% 58.8%
4995688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 6.04e-01 81.5% 100.0%
3980686 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.72 52.0 5.70e-01 83.1% 100.0%
3217489 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 48.0 5.48e-01 70.8% 90.0%
2881541 3697.1.1.1 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.72 50.0 5.06e-01 73.8% 74.2%
3507787 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.71 48.0 5.42e-01 70.8% 92.0%
3713487 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 5.02e-01 73.8% 76.7%
4603528 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.70 53.0 5.07e-01 86.2% 70.7%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 5.44e-01 81.5% 88.3%
4983993 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 49.0 5.11e-01 75.4% 88.3%
4979205 613.1.1.0 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 0.69 62.0 4.40e-01 98.5% 35.7%
4283899 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.65 46.0 3.35e-01 75.4% 28.9%
5069770 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.63 55.0 4.31e-01 96.9% 87.4%
3651470 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 51.0 4.11e-01 92.3% 48.5%
4495608 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 4.74e-01 76.9% 94.0%
4992556 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.61 51.0 4.51e-01 100.0% 62.9%
3429968 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.60 42.0 4.12e-01 73.8% 71.4%
3491972 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.59 46.0 4.43e-01 87.7% 78.7%
3307067 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.59 47.0 3.29e-01 87.7% 47.1%
4086118 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.56 45.0 3.42e-01 98.5% 36.8%
4413281 101.1.1.90 alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N 0.55 38.0 4.16e-01 73.8% 96.0%
3459251 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.52 39.0 3.74e-01 83.1% 75.0%
3470303 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 39.0 3.76e-01 90.8% 72.5%
D4 high residues 315-367
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 56.0 5.85e-01 75.5% 81.2%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.79 57.0 6.14e-01 79.2% 100.0%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 59.0 5.86e-01 81.1% 77.8%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 57.0 6.00e-01 81.1% 89.4%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 57.0 5.10e-01 81.1% 59.2%
7t2rC01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.74 53.0 5.21e-01 75.5% 73.7%
3e7lA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 57.0 5.50e-01 88.7% 73.3%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 55.0 5.79e-01 81.1% 95.7%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 54.0 5.39e-01 81.1% 88.9%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 49.0 4.48e-01 79.2% 55.7%
7u37A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.11e-01 84.9% 71.4%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.68 44.0 4.57e-01 90.6% 72.0%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.64e-01 92.5% 60.2%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.66 54.0 4.82e-01 98.1% 82.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.49e-01 98.1% 52.9%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 50.0 4.57e-01 84.9% 69.4%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.11e-01 100.0% 87.3%
1ynsA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 52.0 3.77e-01 94.3% 34.7%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 45.0 4.02e-01 84.9% 89.9%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.61e-01 84.9% 86.5%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 43.0 3.99e-01 86.8% 71.2%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.54 39.0 3.57e-01 83.0% 61.3%
7aj9A01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.53 37.0 3.44e-01 71.7% 76.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3777065 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.82 63.0 5.96e-01 83.0% 70.3%
3262509 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 62.0 5.13e-01 81.1% 50.0%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 67.0 5.51e-01 100.0% 51.6%
3987779 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 72.0 5.96e-01 100.0% 76.7%
3815398 101.1.1.253 alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.79 60.0 4.86e-01 83.0% 45.0%
4983993 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 61.0 5.86e-01 84.9% 88.3%
3979215 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 57.0 5.64e-01 77.4% 87.3%
3217489 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.78 58.0 6.02e-01 81.1% 84.0%
3466087 101.1.1.253 alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.77 58.0 6.00e-01 83.0% 90.0%
3713487 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 58.0 5.61e-01 81.1% 71.7%
152212 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.75 56.0 5.23e-01 86.8% 63.2%
5050961 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 6.07e-01 81.1% 97.5%
4995688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 6.55e-01 96.2% 100.0%
3970952 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 55.0 5.51e-01 86.8% 76.4%
4640861 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 5.88e-01 92.5% 83.3%
2881541 3697.1.1.1 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.75 58.0 5.48e-01 86.8% 74.2%
5080663 3697.1.1.1 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.74 57.0 5.41e-01 84.9% 73.8%
185183 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.74 61.0 4.67e-01 94.3% 94.5%
4596898 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.74 63.0 5.51e-01 96.2% 65.0%
4968362 3697.1.1.1 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.74 58.0 5.33e-01 86.8% 70.0%
3507787 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.73 57.0 5.85e-01 83.0% 90.0%
4954538 3697.1.1.0 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain 0.73 54.0 5.80e-01 81.1% 97.8%
3385907 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 65.0 6.45e-01 100.0% 96.4%
4969333 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.80e-01 81.1% 95.6%
5039245 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.63e-01 90.6% 98.0%
4443612 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 45.0 4.69e-01 75.5% 76.0%
4927679 129.1.1.3 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › UDPG_MGDP_dh 0.65 45.0 3.66e-01 73.6% 38.1%
5051627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.05e-01 98.1% 72.9%
3459251 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.62 45.0 3.99e-01 79.2% 61.3%
4941209 604.39.1.3 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS 0.57 47.0 3.44e-01 96.2% 86.9%
3470303 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 44.0 3.93e-01 88.7% 66.3%
3491972 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.57 42.0 3.92e-01 86.8% 69.3%
5004484 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.51 40.0 3.65e-01 100.0% 97.6%