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MN369756.1__QGH79733.1__SEA_ANON_62__00061

Bact-Vir

MN369756.1__QGH79733.1__SEA_ANON_62__00061

Identity

Accession:
MN369756 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Soupsvirus› Gordonia_phage_Anon

TaxID: 2653744

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-73
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.87 54.0 6.33e-01 100.0% 88.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 56.0 6.68e-01 98.6% 100.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 61.0 6.53e-01 100.0% 93.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 52.0 5.60e-01 100.0% 78.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 4.91e-01 100.0% 60.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 60.0 6.54e-01 100.0% 96.6%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 51.0 5.63e-01 100.0% 82.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.79 48.0 5.27e-01 100.0% 75.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 52.0 6.00e-01 100.0% 95.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 58.0 6.25e-01 100.0% 91.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 60.0 5.85e-01 100.0% 74.7%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 59.0 6.18e-01 100.0% 88.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 60.0 6.36e-01 100.0% 93.3%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 58.0 6.22e-01 100.0% 94.8%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 5.24e-01 100.0% 65.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 58.0 6.13e-01 100.0% 91.8%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.74 48.0 5.28e-01 100.0% 83.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 4.56e-01 100.0% 46.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 55.0 5.79e-01 100.0% 87.3%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 6.03e-01 100.0% 100.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.82e-01 100.0% 90.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 4.98e-01 100.0% 62.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.66e-01 100.0% 79.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.31e-01 100.0% 77.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.46e-01 100.0% 81.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.45e-01 100.0% 51.9%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.33e-01 100.0% 77.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 44.0 4.93e-01 100.0% 96.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 49.0 4.89e-01 88.4% 81.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.79e-01 98.6% 100.0%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.05e-01 75.4% 78.0%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.12e-01 94.2% 94.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.07e-01 94.2% 87.3%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.70e-01 95.7% 71.7%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.57e-01 94.2% 94.6%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 4.41e-01 92.8% 93.7%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.82e-01 94.2% 87.9%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.77e-01 92.8% 98.1%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 44.0 4.04e-01 98.6% 88.3%
5m3nA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 42.0 3.81e-01 92.8% 67.0%
2p3wB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 42.0 3.79e-01 92.8% 67.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 40.0 3.45e-01 94.2% 86.3%
3a1cA02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 38.0 3.34e-01 87.0% 96.6%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.50 40.0 3.28e-01 91.3% 72.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 61.0 6.32e-01 100.0% 78.5%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 55.0 5.32e-01 100.0% 62.7%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 62.0 6.18e-01 100.0% 77.1%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 59.0 6.30e-01 100.0% 91.7%
3323533 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.78 59.0 6.11e-01 100.0% 84.6%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 55.0 4.95e-01 100.0% 55.6%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 58.0 6.39e-01 100.0% 98.2%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 56.0 4.88e-01 100.0% 52.0%
4012096 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 58.0 4.94e-01 100.0% 50.0%
3370388 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.77 57.0 5.91e-01 100.0% 84.6%
3365104 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 57.0 5.92e-01 100.0% 84.6%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.76 67.0 6.35e-01 100.0% 82.5%
3323558 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 57.0 6.04e-01 100.0% 91.7%
3597248 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 4.73e-01 100.0% 53.7%
3789696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 4.83e-01 100.0% 56.7%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 60.0 5.15e-01 100.0% 57.1%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 60.0 6.01e-01 100.0% 87.1%
3591209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.46e-01 78.3% 88.3%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 51.0 4.39e-01 100.0% 49.5%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 57.0 5.20e-01 100.0% 66.7%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 63.0 5.60e-01 100.0% 71.6%
3767452 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.22e-01 98.6% 83.6%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 63.0 6.00e-01 100.0% 91.3%
3929372 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 53.0 5.22e-01 98.6% 77.3%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 57.0 5.75e-01 100.0% 94.3%
3221547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.36e-01 100.0% 77.5%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 59.0 5.77e-01 100.0% 88.0%
4013324 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.10e-01 100.0% 81.4%
3388630 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 56.0 5.35e-01 100.0% 78.8%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.67e-01 98.6% 98.5%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.08e-01 100.0% 77.6%
3617677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.25e-01 100.0% 82.5%
5049308 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 39.0 4.34e-01 89.9% 80.0%
4627416 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.60 38.0 3.81e-01 94.2% 62.9%
3199589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.60e-01 100.0% 75.6%
3489172 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.58 52.0 4.09e-01 100.0% 60.7%
4013810 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.55e-01 100.0% 76.7%
989 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.56 46.0 4.05e-01 94.2% 87.0%
3721951 220.1.1.96 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3292 0.56 45.0 3.62e-01 94.2% 85.9%
4150541 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.55 42.0 3.69e-01 82.6% 98.1%
3598206 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.06e-01 97.1% 84.5%
3583039 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 3.76e-01 97.1% 79.3%
4153258 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 44.0 3.60e-01 87.0% 74.4%
3253063 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 45.0 3.89e-01 95.7% 77.4%
3704944 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 4.09e-01 97.1% 84.0%
3235806 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.54 43.0 3.50e-01 92.8% 93.3%
3796176 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.51 41.0 3.35e-01 94.2% 73.3%
4962106 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 41.0 3.41e-01 89.9% 67.2%