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MN428053.1__QFP96676.1__SEA_DENISE_61__00061

Bact-Vir

MN428053.1__QFP96676.1__SEA_DENISE_61__00061

Identity

Accession:
MN428053 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Denisevirus› Gordonia_phage_Denise

TaxID: 2652879

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-87
PDB
Domain cluster: rep: OP434452.1__UYL87438.1__SEA_PUREGLOBE5_75__00075__D44-100
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 45.0 3.76e-01 100.0% 40.7%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 32.0 4.21e-01 80.0% 88.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 37.0 3.64e-01 92.3% 51.5%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 36.0 3.84e-01 92.3% 64.8%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.80e-01 83.1% 89.8%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 39.0 3.42e-01 95.4% 42.9%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.76e-01 100.0% 49.1%
1p77A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 48.0 3.66e-01 90.8% 53.0%
2vunA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.57 39.0 3.13e-01 95.4% 37.0%
3tt2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 47.0 3.09e-01 98.5% 43.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 40.0 4.19e-01 92.3% 88.1%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 4.23e-01 86.2% 92.4%
7r71A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 40.0 4.05e-01 100.0% 85.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 37.0 3.34e-01 75.4% 77.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 4.13e-01 87.7% 91.0%
6tuaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 46.0 3.31e-01 100.0% 57.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 4.05e-01 84.6% 95.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.46e-01 96.9% 64.8%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 4.05e-01 86.2% 92.4%
4k28A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 44.0 3.66e-01 98.5% 95.8%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 37.0 2.41e-01 78.5% 61.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 39.0 3.95e-01 87.7% 89.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3447770 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.72 40.0 4.99e-01 86.2% 100.0%
3540261 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.67 51.0 5.46e-01 93.8% 98.2%
3729598 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.64 45.0 4.72e-01 93.8% 81.7%
3697259 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.64 44.0 4.74e-01 92.3% 87.3%
4679970 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.62 40.0 3.43e-01 96.9% 39.0%
5054192 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.58 44.0 3.78e-01 80.0% 60.0%
3279550 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 28.0 3.43e-01 75.4% 71.4%
3257948 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 42.0 4.20e-01 100.0% 80.9%
1176176 818.1.1.2 ↗ a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain › Top1B_N_bact 0.56 30.0 3.01e-01 78.5% 50.0%
3724590 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 45.0 4.43e-01 93.8% 88.6%
3645592 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 36.0 3.28e-01 75.4% 77.0%
3691749 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.50 42.0 2.93e-01 96.9% 82.6%