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MN428055.1__QFP96844.1__SEA_MCKLOVIN_59__00059
Bact-VirMN428055.1__QFP96844.1__SEA_MCKLOVIN_59__00059
Identity
- Accession:
- MN428055 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
TaxID: 2652881
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 121-201
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ilyA00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.64 | 44.0 | 4.31e-01 | 72.8% | 65.6% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.60 | 41.0 | 3.47e-01 | 71.6% | 41.3% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.55 | 41.0 | 2.98e-01 | 80.2% | 41.1% |
| 5llyA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 39.0 | 3.05e-01 | 75.3% | 53.5% |
| 1u2kA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.52 | 33.0 | 2.86e-01 | 79.0% | 40.6% |
| 4bwiB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 40.0 | 3.15e-01 | 87.7% | 54.2% |
| 3p6lA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 34.0 | 2.48e-01 | 71.6% | 98.9% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.50 | 38.0 | 3.09e-01 | 84.0% | 84.2% |
| 1fwxA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.52e-01 | 88.9% | 60.8% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 31.0 | 3.16e-01 | 71.6% | 62.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4283629 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.65 | 43.0 | 3.59e-01 | 95.1% | 41.5% |
| 3887159 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.56 | 32.0 | 3.50e-01 | 71.6% | 69.2% |
| 3260811 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 37.0 | 4.04e-01 | 72.8% | 84.6% |
| 2994234 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.55 | 38.0 | 3.12e-01 | 72.8% | 70.2% |
| 4190296 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.54 | 39.0 | 3.44e-01 | 76.5% | 51.7% |
| 4932840 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.54 | 37.0 | 3.26e-01 | 72.8% | 52.3% |
| 3516761 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.54 | 37.0 | 3.70e-01 | 72.8% | 76.5% |
| 4970082 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 35.0 | 2.79e-01 | 70.4% | 87.3% |
| 3498756 | 5.1.4.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 | 0.51 | 38.0 | 2.31e-01 | 84.0% | 33.9% |
| 3495411 | 5.1.4.269 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML | 0.50 | 39.0 | 2.69e-01 | 86.4% | 68.3% |
D2
medium
residues 1-57_72-93
D3
medium
residues 209-273
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rq1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.80 | 49.0 | 3.68e-01 | 86.2% | 26.8% |
| 7dklA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 3.88e-01 | 76.9% | 86.0% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.58 | 37.0 | 3.78e-01 | 75.4% | 65.2% |
| 4m2mA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 40.0 | 3.02e-01 | 83.1% | 30.6% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 48.0 | 2.90e-01 | 95.4% | 46.5% |
| 3ffhA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 43.0 | 3.36e-01 | 86.2% | 62.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4877205 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.60 | 51.0 | 3.68e-01 | 100.0% | 31.1% |
| 3412025 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.58 | 50.0 | 3.31e-01 | 98.5% | 78.2% |
| 4982145 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 50.0 | 4.02e-01 | 98.5% | 65.0% |
| 3738604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.28e-01 | 81.5% | 47.6% |