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MN444876.1__QGH76512.1__SEA_DAUBENSKI_246__00206
Bact-VirMN444876.1__QGH76512.1__SEA_DAUBENSKI_246__00206
Identity
- Accession:
- MN444876 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Samistivirus›
Streptomyces_phage_Daubenski
TaxID: 2653725
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-101
Domain cluster:
rep: 5H_04062016_scaffold_1_prodigal-single.1__X__X__00437__D55-187
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06067.17 best | DUF932 | 95.3 | 6.70e-27 | 100.0% | 39.2% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.71 | 49.0 | 4.12e-01 | 94.0% | 42.4% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.66 | 57.0 | 5.18e-01 | 95.0% | 85.3% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.64 | 39.0 | 3.69e-01 | 70.0% | 51.3% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.63 | 54.0 | 4.50e-01 | 92.0% | 100.0% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 41.0 | 3.44e-01 | 74.0% | 94.4% |
| 1jkgB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.45e-01 | 75.0% | 42.2% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 36.0 | 3.29e-01 | 79.0% | 44.9% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 35.0 | 3.11e-01 | 90.0% | 41.2% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 45.0 | 3.14e-01 | 94.0% | 25.2% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 41.0 | 3.33e-01 | 85.0% | 40.4% |
| 3dbxA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 47.0 | 3.89e-01 | 92.0% | 99.4% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 47.0 | 3.20e-01 | 91.0% | 32.8% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.52e-01 | 80.0% | 52.1% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 44.0 | 3.85e-01 | 88.0% | 76.1% |
| 4ffgA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 46.0 | 3.27e-01 | 94.0% | 35.3% |
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 43.0 | 3.62e-01 | 98.0% | 51.2% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.54 | 48.0 | 4.15e-01 | 99.0% | 75.3% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 43.0 | 4.02e-01 | 99.0% | 69.9% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 3.56e-01 | 100.0% | 50.9% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 39.0 | 3.45e-01 | 99.0% | 51.3% |
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 3.20e-01 | 92.0% | 32.8% |
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.64e-01 | 90.0% | 99.4% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.12e-01 | 72.0% | 47.2% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 46.0 | 4.12e-01 | 99.0% | 77.1% |
| 5e1vB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 42.0 | 3.06e-01 | 87.0% | 78.5% |
| 5xd7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 39.0 | 3.67e-01 | 83.0% | 90.6% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 37.0 | 3.33e-01 | 75.0% | 95.6% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.50 | 40.0 | 3.60e-01 | 89.0% | 61.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941745 | 241.15.1.4 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › DUF932 | 0.76 | 54.0 | 4.77e-01 | 84.0% | 51.0% |
| 3277627 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.71 | 43.0 | 4.08e-01 | 77.0% | 52.2% |
| 3736685 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.66 | 45.0 | 3.76e-01 | 100.0% | 41.2% |
| 3802472 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.65 | 46.0 | 3.24e-01 | 96.0% | 23.9% |
| 3275455 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.64 | 51.0 | 4.82e-01 | 96.0% | 70.8% |
| 3468093 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.64 | 44.0 | 4.51e-01 | 90.0% | 72.4% |
| 3581448 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 53.0 | 5.06e-01 | 100.0% | 78.3% |
| 5049047 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.62 | 45.0 | 4.24e-01 | 82.0% | 61.6% |
| None | — | 0.61 | 51.0 | 3.58e-01 | 91.0% | 31.7% | |
| 3322985 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 52.0 | 3.40e-01 | 93.0% | 22.1% |
| 3447587 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.60 | 50.0 | 3.51e-01 | 91.0% | 30.8% |
| 4015830 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 50.0 | 3.21e-01 | 91.0% | 24.4% |
| 4991701 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.60 | 46.0 | 3.56e-01 | 93.0% | 37.7% |
| 3995515 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 51.0 | 3.60e-01 | 99.0% | 30.5% |
| 3419997 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.59 | 43.0 | 4.22e-01 | 94.0% | 69.7% |
| 3508100 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.59 | 48.0 | 4.38e-01 | 100.0% | 65.0% |
| 3628460 | 3308.1.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme | 0.59 | 45.0 | 4.93e-01 | 87.0% | 100.0% |
| 4993562 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 41.0 | 4.05e-01 | 85.0% | 68.6% |
| 4142302 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.57 | 44.0 | 3.03e-01 | 92.0% | 24.5% |
| 3609908 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 43.0 | 4.19e-01 | 94.0% | 73.6% |
| 3309019 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.57 | 47.0 | 3.32e-01 | 92.0% | 30.6% |
| 3441598 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.56 | 48.0 | 3.39e-01 | 92.0% | 32.8% |
| 4946845 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 43.0 | 3.19e-01 | 81.0% | 37.8% |
| 3972797 | 4321.1.1.1 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298 | 0.55 | 49.0 | 3.81e-01 | 99.0% | 61.4% |
| 3832313 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 48.0 | 3.33e-01 | 95.0% | 29.5% |
| 5033918 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.55 | 48.0 | 4.00e-01 | 99.0% | 82.8% |
| 3939750 | 5.1.4.55 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb | 0.55 | 48.0 | 3.07e-01 | 96.0% | 21.9% |
| 3804708 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.52 | 41.0 | 2.94e-01 | 86.0% | 34.1% |
| 4960423 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.13e-01 | 96.0% | 31.6% |
| 3459442 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.52 | 45.0 | 4.08e-01 | 96.0% | 78.5% |
| 3324058 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 46.0 | 3.09e-01 | 99.0% | 82.7% |
| 3863963 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.51 | 43.0 | 4.02e-01 | 93.0% | 76.0% |
D2
high
residues 106-210
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 41.0 | 4.67e-01 | 99.0% | 100.0% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 49.0 | 3.62e-01 | 95.2% | 62.3% |
| 1ak0A00 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.57 | 44.0 | 3.31e-01 | 82.9% | 72.0% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.56 | 43.0 | 3.90e-01 | 81.9% | 94.3% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.55 | 49.0 | 4.45e-01 | 100.0% | 74.3% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 3.43e-01 | 84.8% | 74.6% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.53 | 42.0 | 3.40e-01 | 83.8% | 48.2% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 40.0 | 3.76e-01 | 88.6% | 80.5% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.50 | 40.0 | 4.25e-01 | 91.4% | 100.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3640096 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.62 | 47.0 | 3.57e-01 | 81.0% | 91.4% |
| 4211419 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.58 | 46.0 | 4.50e-01 | 98.1% | 78.3% |
| 3353188 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.57 | 43.0 | 3.19e-01 | 78.1% | 93.0% |
| 3976610 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.57 | 40.0 | 4.08e-01 | 100.0% | 76.0% |
| 4026082 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 35.0 | 3.21e-01 | 81.0% | 47.1% |
| 3517249 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.56 | 40.0 | 3.99e-01 | 100.0% | 70.9% |
| 3935238 | 108.1.1.35 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_13 | 0.54 | 37.0 | 3.57e-01 | 70.5% | 92.5% |
| 3461460 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 38.0 | 3.70e-01 | 75.2% | 80.0% |
| 4002595 | 148.1.1.47 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone, CENP-T_C | 0.52 | 45.0 | 3.88e-01 | 92.4% | 71.0% |
| 4977082 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.50 | 42.0 | 3.25e-01 | 90.5% | 69.6% |