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MN484600.1__QGH74546.1__SEA_KULEANA_59__00059
Bact-VirMN484600.1__QGH74546.1__SEA_KULEANA_59__00059
Identity
- Accession:
- MN484600 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Taxonomy
TaxID: 2653270
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-58
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p9xA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.74 | 53.0 | 3.47e-01 | 75.5% | 47.7% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.72 | 60.0 | 5.30e-01 | 100.0% | 63.2% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.68 | 61.0 | 4.33e-01 | 100.0% | 40.4% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.67 | 55.0 | 4.49e-01 | 100.0% | 49.0% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.67 | 47.0 | 2.93e-01 | 75.5% | 97.6% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.65 | 54.0 | 4.36e-01 | 100.0% | 49.1% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 49.0 | 4.06e-01 | 83.7% | 68.8% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.63 | 48.0 | 4.29e-01 | 100.0% | 57.1% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.62 | 39.0 | 4.21e-01 | 83.7% | 83.3% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 51.0 | 4.22e-01 | 100.0% | 53.1% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 50.0 | 3.55e-01 | 95.9% | 89.5% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 44.0 | 4.70e-01 | 100.0% | 97.4% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.60 | 48.0 | 4.59e-01 | 93.9% | 78.3% |
| 2g3wA00 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.60 | 52.0 | 3.56e-01 | 100.0% | 94.4% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 47.0 | 3.50e-01 | 93.9% | 76.0% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.60 | 47.0 | 3.27e-01 | 93.9% | 24.2% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 42.0 | 3.62e-01 | 91.8% | 44.2% |
| 8dqaA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 48.0 | 3.86e-01 | 91.8% | 93.9% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 47.0 | 3.92e-01 | 98.0% | 51.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.58 | 47.0 | 3.17e-01 | 98.0% | 41.0% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 50.0 | 2.99e-01 | 100.0% | 93.1% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.58 | 44.0 | 3.62e-01 | 85.7% | 98.9% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.58 | 45.0 | 3.89e-01 | 85.7% | 76.6% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.58 | 47.0 | 3.74e-01 | 89.8% | 77.8% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 41.0 | 3.29e-01 | 77.6% | 90.0% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.57 | 44.0 | 3.16e-01 | 85.7% | 60.5% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 42.0 | 2.93e-01 | 95.9% | 20.7% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.56 | 39.0 | 3.07e-01 | 79.6% | 57.3% |
| 4ezeB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.56 | 44.0 | 2.78e-01 | 91.8% | 39.4% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 39.0 | 3.20e-01 | 73.5% | 40.2% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.55 | 44.0 | 3.15e-01 | 93.9% | 56.4% |
| 5ip4E00 | 3.10.20.230 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain | 0.55 | 42.0 | 3.75e-01 | 100.0% | 54.8% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 42.0 | 3.13e-01 | 98.0% | 31.6% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 37.0 | 2.57e-01 | 73.5% | 92.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 39.0 | 3.88e-01 | 100.0% | 78.9% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 41.0 | 3.18e-01 | 91.8% | 52.7% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 37.0 | 3.13e-01 | 75.5% | 58.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.51 | 42.0 | 3.46e-01 | 91.8% | 61.1% |
| 1p5dX04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.51 | 44.0 | 3.64e-01 | 100.0% | 67.7% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 38.0 | 2.82e-01 | 95.9% | 30.2% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 40.0 | 2.67e-01 | 93.9% | 60.1% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 39.0 | 2.59e-01 | 81.6% | 61.7% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.50 | 42.0 | 2.86e-01 | 100.0% | 76.6% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706447 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.79 | 68.0 | 5.13e-01 | 100.0% | 40.0% |
| 3235148 | 221.1.1.58 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CRIM | 0.71 | 59.0 | 4.70e-01 | 100.0% | 47.3% |
| 3704397 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.71 | 54.0 | 4.67e-01 | 100.0% | 51.8% |
| 3058947 | 221.1.1.8 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd | 0.71 | 50.0 | 3.84e-01 | 79.6% | 31.1% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 56.0 | 5.50e-01 | 98.0% | 85.5% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.68 | 48.0 | 3.86e-01 | 75.5% | 75.8% |
| 3339933 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.67 | 54.0 | 3.42e-01 | 91.8% | 71.2% |
| 4609775 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.65 | 53.0 | 4.37e-01 | 95.9% | 85.3% |
| 4354219 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.65 | 53.0 | 4.25e-01 | 93.9% | 85.0% |
| 3503544 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 54.0 | 4.28e-01 | 100.0% | 57.3% |
| 2809021 | 221.1.1.18 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG8 | 0.64 | 51.0 | 3.71e-01 | 100.0% | 31.0% |
| 3599185 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 51.0 | 4.09e-01 | 93.9% | 43.8% |
| 3795846 | 221.4.1.8 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 | 0.62 | 52.0 | 3.92e-01 | 98.0% | 52.3% |
| 3996192 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 45.0 | 2.97e-01 | 79.6% | 38.6% |
| 4002159 | 1073.1.1.1 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › MCU | 0.60 | 48.0 | 2.97e-01 | 100.0% | 15.1% |
| 3263226 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 36.0 | 3.98e-01 | 71.4% | 84.8% |
| 3628638 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 46.0 | 2.81e-01 | 85.7% | 32.1% |
| 3583046 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 43.0 | 4.20e-01 | 93.9% | 74.5% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.59 | 44.0 | 2.73e-01 | 81.6% | 82.9% |
| 4001707 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.58 | 48.0 | 4.16e-01 | 100.0% | 61.2% |
| 3273263 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.58 | 43.0 | 2.55e-01 | 79.6% | 94.7% |
| 3487190 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 47.0 | 3.96e-01 | 100.0% | 50.5% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 44.0 | 3.41e-01 | 91.8% | 35.2% |
| 3326759 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.57 | 44.0 | 4.00e-01 | 100.0% | 61.3% |
| 3785577 | 109.4.1.89 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD | 0.57 | 45.0 | 2.75e-01 | 91.8% | 48.9% |
| 3269296 | 2006.1.6.22 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 | 0.57 | 44.0 | 2.88e-01 | 83.7% | 23.0% |
| 4957434 | 213.5.1.1 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like | 0.56 | 48.0 | 3.92e-01 | 98.0% | 51.6% |
| 3666034 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.56 | 38.0 | 2.92e-01 | 98.0% | 30.9% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.56 | 45.0 | 3.89e-01 | 91.8% | 55.7% |
| 4980707 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 46.0 | 3.62e-01 | 91.8% | 44.8% |
| 5029930 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 48.0 | 3.84e-01 | 98.0% | 62.0% |
| 3289468 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 44.0 | 3.92e-01 | 87.8% | 81.4% |
| 3221653 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.55 | 44.0 | 2.68e-01 | 93.9% | 90.0% |
| 3925690 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.54 | 45.0 | 4.00e-01 | 95.9% | 62.7% |
| 3212521 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 39.0 | 2.42e-01 | 79.6% | 84.5% |
| 4937952 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.54 | 39.0 | 2.59e-01 | 91.8% | 15.8% |
| 3510702 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.53 | 40.0 | 2.71e-01 | 93.9% | 20.8% |
| 4284024 | 207.1.1.224 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 | 0.53 | 47.0 | 2.90e-01 | 100.0% | 26.6% |
| 1815422 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.52 | 43.0 | 2.78e-01 | 89.8% | 45.9% |
| 4985406 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.52 | 42.0 | 3.65e-01 | 91.8% | 58.2% |
| 3684317 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 37.0 | 2.09e-01 | 77.6% | 21.0% |
| 4995957 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.51 | 43.0 | 3.85e-01 | 95.9% | 72.9% |
| 4855517 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.51 | 40.0 | 2.67e-01 | 85.7% | 31.4% |
| 3961932 | 323.1.1.9 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C | 0.51 | 44.0 | 2.89e-01 | 100.0% | 85.7% |
| 3560901 | 601.19.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 | 0.51 | 40.0 | 3.61e-01 | 95.9% | 60.0% |
| 3774738 | 7529.1.1.11 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 | 0.51 | 40.0 | 3.48e-01 | 95.9% | 52.9% |
| 3827285 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 34.0 | 3.33e-01 | 71.4% | 63.6% |
| 5001130 | 101.1.2.44 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 | 0.50 | 43.0 | 3.42e-01 | 95.9% | 62.0% |
| 3579172 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.50 | 40.0 | 2.67e-01 | 93.9% | 21.3% |
| 3857887 | 5094.1.1.11 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 | 0.50 | 40.0 | 3.58e-01 | 95.9% | 60.0% |
| 3305241 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.50 | 42.0 | 2.91e-01 | 98.0% | 43.9% |