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MN484601.1__QGF20309.1__SEA_SIXAMA_138__00130
Bact-VirMN484601.1__QGF20309.1__SEA_SIXAMA_138__00130
Identity
- Accession:
- MN484601 ↗
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Taxonomy
TaxID: 2653271
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-64
Domain cluster:
rep: OR159664.1__WKW85988.1__SEA_JONJAMES_7__00007__D4-62
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 44.0 | 3.12e-01 | 75.4% | 54.7% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.60 | 30.0 | 3.38e-01 | 96.7% | 60.0% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 47.0 | 3.59e-01 | 93.4% | 36.7% |
| 2obdA01 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.57 | 47.0 | 3.16e-01 | 100.0% | 35.3% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.55 | 42.0 | 3.47e-01 | 90.2% | 53.4% |
| 2b0aA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.53 | 41.0 | 3.06e-01 | 91.8% | 91.4% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 40.0 | 2.75e-01 | 85.2% | 66.4% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 2.55e-01 | 78.7% | 55.4% |
| 4afkA00 | 2.40.160.100 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 40.0 | 2.52e-01 | 95.1% | 21.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947459 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.66e-01 | 100.0% | 44.5% |
| 4954522 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.59 | 44.0 | 3.90e-01 | 100.0% | 54.3% |
| 3773744 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.58 | 50.0 | 3.70e-01 | 100.0% | 47.3% |
| 5070602 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 42.0 | 3.41e-01 | 95.1% | 37.1% |
| 5074340 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 44.0 | 3.53e-01 | 100.0% | 40.0% |
| 4020791 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.55 | 41.0 | 2.95e-01 | 80.3% | 74.9% |
| 3167354 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.54 | 37.0 | 3.56e-01 | 100.0% | 61.6% |
| 3480610 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.54 | 36.0 | 3.47e-01 | 100.0% | 60.0% |
| 2037626 | 808.1.1.1 ↗ | a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap | 0.54 | 40.0 | 3.37e-01 | 83.6% | 49.6% |
| 2640297 | 808.1.1.1 ↗ | a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap | 0.53 | 38.0 | 3.15e-01 | 77.0% | 48.3% |
| 4886985 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.53 | 36.0 | 2.95e-01 | 90.2% | 35.2% |
| 3680215 | 109.4.1.880 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th | 0.52 | 45.0 | 2.59e-01 | 100.0% | 21.6% |
| 3199254 | 604.6.1.41 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF846 | 0.52 | 41.0 | 3.31e-01 | 91.8% | 61.5% |
| 5011329 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.50 | 39.0 | 2.32e-01 | 85.2% | 22.4% |