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MN484601.1__QGF20342.1__SEA_SIXAMA_192__00163

Bact-Vir

MN484601.1__QGF20342.1__SEA_SIXAMA_192__00163

Identity

Accession:
MN484601 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sixamavirus› Gordonia_phage_Sixama

TaxID: 2653271

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-74
PDB
Domain cluster: rep: sw_7_scaffold_1_prodigal-single.1__X__X__00245__D8-59
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.39e-01 98.4% 73.1%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 52.0 3.78e-01 96.7% 74.4%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 44.0 4.40e-01 78.7% 78.1%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.81e-01 93.4% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.57e-01 100.0% 81.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 3.91e-01 100.0% 52.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 49.0 4.59e-01 100.0% 76.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.22e-01 98.4% 68.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 37.0 3.47e-01 75.4% 50.0%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 49.0 3.49e-01 98.4% 38.5%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 4.10e-01 83.6% 96.2%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 40.0 3.16e-01 77.0% 32.6%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.41e-01 100.0% 92.7%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.57 46.0 4.38e-01 100.0% 76.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 41.0 4.24e-01 78.7% 89.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.03e-01 98.4% 65.1%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.74e-01 100.0% 100.0%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 40.0 4.18e-01 88.5% 85.7%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 47.0 3.66e-01 100.0% 69.0%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.60e-01 100.0% 41.3%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 2.77e-01 88.5% 29.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.42e-01 100.0% 78.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.33e-01 100.0% 87.1%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.55 38.0 4.00e-01 78.7% 85.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.16e-01 96.7% 96.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.39e-01 98.4% 83.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.93e-01 90.2% 79.7%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 46.0 4.59e-01 98.4% 98.4%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.86e-01 77.0% 91.1%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.53 43.0 3.35e-01 100.0% 67.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.39e-01 98.4% 39.1%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 45.0 3.24e-01 100.0% 59.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 4.10e-01 98.4% 89.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.82e-01 100.0% 73.5%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.53 36.0 3.90e-01 73.8% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.15e-01 100.0% 87.1%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.53 31.0 3.54e-01 96.7% 82.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.71e-01 98.4% 70.2%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.93e-01 100.0% 89.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.28e-01 100.0% 63.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 37.0 2.65e-01 77.0% 90.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.56e-01 100.0% 51.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.52 38.0 3.70e-01 82.0% 90.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.33e-01 93.4% 51.0%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.36e-01 83.6% 95.2%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 40.0 3.42e-01 100.0% 52.3%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 35.0 3.47e-01 73.8% 73.4%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929809 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 40.0 4.68e-01 83.6% 95.0%
5080017 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 55.0 4.13e-01 98.4% 54.4%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.65 47.0 5.06e-01 90.2% 96.0%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 50.0 4.00e-01 100.0% 41.5%
3497365 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 46.0 4.84e-01 95.1% 89.1%
3964666 4.1.1.137 ↗ beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.62 44.0 4.46e-01 93.4% 78.3%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.80e-01 100.0% 89.1%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.65e-01 91.8% 87.3%
5071741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.75e-01 100.0% 85.0%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.62 48.0 4.39e-01 100.0% 63.5%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.61 43.0 4.57e-01 90.2% 88.0%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.61 52.0 4.60e-01 100.0% 85.4%
3171334 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.61 50.0 4.19e-01 100.0% 51.8%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.20e-01 100.0% 65.3%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.26e-01 98.4% 62.7%
5038570 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 49.0 4.01e-01 100.0% 47.5%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.79e-01 98.4% 91.4%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 46.0 3.92e-01 100.0% 49.1%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 45.0 4.65e-01 100.0% 91.2%
3786120 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 41.0 4.34e-01 72.1% 94.0%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.59 47.0 4.18e-01 100.0% 58.9%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 45.0 4.29e-01 98.4% 70.7%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 47.0 4.69e-01 98.4% 86.2%
3930845 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 40.0 3.93e-01 77.0% 64.3%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 49.0 4.27e-01 98.4% 72.0%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.58 44.0 4.12e-01 100.0% 66.7%
3931602 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 41.0 3.99e-01 77.0% 70.0%
3997935 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 42.0 3.60e-01 80.3% 82.9%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.57 44.0 4.54e-01 100.0% 94.5%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.57 43.0 3.89e-01 100.0% 58.8%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.57 41.0 4.07e-01 93.4% 73.8%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 48.0 3.77e-01 100.0% 43.8%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 47.0 4.21e-01 98.4% 64.4%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.57 46.0 4.19e-01 93.4% 77.6%
3711918 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 51.0 4.00e-01 100.0% 49.6%
3165957 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.56 40.0 3.79e-01 77.0% 93.3%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.56 41.0 3.09e-01 100.0% 30.6%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.49e-01 98.4% 93.3%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.56 41.0 4.05e-01 100.0% 74.3%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 48.0 3.67e-01 100.0% 40.6%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 39.0 4.02e-01 75.4% 82.8%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.56 46.0 4.46e-01 98.4% 82.9%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 48.0 3.63e-01 100.0% 40.6%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.87e-01 93.4% 70.8%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.55 39.0 3.95e-01 75.4% 80.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.55 46.0 4.40e-01 100.0% 80.0%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.55 45.0 4.03e-01 100.0% 63.3%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.55 44.0 4.45e-01 93.4% 93.3%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.55 48.0 4.17e-01 100.0% 64.2%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 44.0 3.88e-01 98.4% 60.0%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.18e-01 100.0% 74.7%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.14e-01 100.0% 78.6%
3954050 4.1.1.356 ↗ beta barrels › SH3 › SH3 › SH3 › PF26090 0.54 46.0 3.94e-01 100.0% 78.1%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.54 39.0 4.03e-01 93.4% 83.1%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 37.0 3.49e-01 70.5% 73.8%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.54 44.0 4.37e-01 91.8% 87.7%
4480519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.18e-01 100.0% 88.3%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.54 42.0 4.10e-01 98.4% 80.0%
3242941 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.02e-01 85.2% 98.6%
4300895 4.11.1.6 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 0.53 45.0 3.57e-01 100.0% 45.7%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.53 44.0 4.02e-01 98.4% 68.9%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 45.0 3.43e-01 100.0% 40.0%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.97e-01 100.0% 77.1%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.53 41.0 3.99e-01 100.0% 78.6%
5039702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 33.0 3.64e-01 75.4% 82.2%
2464208 220.3.1.2 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 0.53 43.0 3.30e-01 95.1% 99.4%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 45.0 3.96e-01 98.4% 82.1%
3166879 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 44.0 4.33e-01 100.0% 90.8%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.53 39.0 4.00e-01 98.4% 90.0%
3702975 3556.1.1.0 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.52 38.0 3.38e-01 80.3% 64.9%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 41.0 3.91e-01 100.0% 74.7%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 38.0 3.77e-01 98.4% 77.9%
4068131 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.51 39.0 3.50e-01 100.0% 55.8%
4537528 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.18e-01 100.0% 91.4%
4003728 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 34.0 2.29e-01 70.5% 40.7%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.51 41.0 3.92e-01 96.7% 76.0%
3670750 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 2.82e-01 100.0% 36.7%