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MN484601.1__QGF20344.1__SEA_SIXAMA_194__00165

Bact-Vir

MN484601.1__QGF20344.1__SEA_SIXAMA_194__00165

Identity

Accession:
MN484601 ↗
Kingdom:
phage

Quality

64.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sixamavirus› Gordonia_phage_Sixama

TaxID: 2653271

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-135_174-240
PDB
Domain cluster: rep: MK170447__AZF89918.1__X__00084__D3-182
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 24.8 3.80e-05 37.6% 35.4%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.60 33.0 3.79e-01 93.5% 69.8%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.59 32.0 3.90e-01 91.4% 78.9%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 26.0 3.46e-01 90.3% 88.8%
6grqA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 26.0 3.48e-01 90.3% 88.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940784 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.69 51.0 5.63e-01 96.8% 91.0%
4237650 3325.1.1.1 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.58 35.0 4.33e-01 90.3% 97.4%
2443941 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 26.0 3.27e-01 90.9% 79.8%
D2 medium residues 136-173_241-261
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 50.0 3.71e-01 89.8% 71.2%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 42.0 3.35e-01 78.0% 39.8%
2jokA01 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.57 48.0 3.49e-01 96.6% 62.3%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.57 36.0 2.94e-01 74.6% 35.1%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.56 39.0 2.97e-01 91.5% 30.6%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 41.0 3.46e-01 83.1% 78.6%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.55 44.0 3.53e-01 89.8% 45.6%
1jfzA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.54 47.0 3.50e-01 96.6% 84.5%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 37.0 2.98e-01 81.4% 37.8%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 43.0 3.94e-01 98.3% 66.7%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 43.0 3.23e-01 96.6% 81.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.45e-01 96.6% 89.4%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 37.0 3.46e-01 83.1% 61.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280946 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 57.0 4.70e-01 98.3% 65.5%
3363261 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.63 57.0 4.28e-01 98.3% 81.5%
3428543 604.6.1.23 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › UPF0220 0.60 44.0 3.47e-01 83.1% 77.9%
3378683 1075.4.1.30 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran 0.59 52.0 3.04e-01 100.0% 19.0%
4872570 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.58 47.0 4.82e-01 96.6% 100.0%
3882598 2004.1.1.635 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 0.53 46.0 3.15e-01 98.3% 89.5%
4334017 601.1.1.43 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A 0.52 44.0 3.54e-01 94.9% 92.5%
3951128 129.1.1.14 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › DUF2520 0.52 38.0 3.04e-01 83.1% 82.8%
3991343 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.52 43.0 2.64e-01 96.6% 20.5%
4545543 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.50 36.0 2.45e-01 74.6% 26.6%