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QGA87216.1

Arc-Vir

MN496305__QGA87216.1__X__00008

Identity

Accession:: MN496305 ↗
Protein ID:: QGA87216.1 ↗
Kingdom:: archaea

Quality

90.8 mean pLDDT

Taxonomy

Fuselloviridae› Betafusellovirus› Sulfolobus_spindle-shaped_virus_SSV19

TaxID: 3035230

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-79_173-184

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fd0A01	3.90.1150.60	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain	0.59	52.0	4.08e-01	97.8%	76.7%
1jykA00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.57	49.0	3.73e-01	96.7%	46.7%
1z2zA02	3.30.70.3160	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	33.0	3.41e-01	76.9%	58.9%
6lxgA01	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.57	32.0	3.52e-01	83.5%	68.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4654321	298.4.1.0 ↗	a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E	0.57	41.0	3.35e-01	76.9%	40.0%

D2 medium residues 80-172

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12187.15 best	VirArc_Nuclease	72.8	3.80e-20	100.0%	47.4%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w8mA00	3.40.1350.50	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif	0.78	61.0	4.98e-01	100.0%	46.7%
2p9mB00	3.10.580.10	Alpha Beta › Roll › CBS-domain › CBS-domain	0.61	38.0	3.46e-01	77.4%	45.0%
1xjhA00	3.90.1280.10	Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like	0.59	35.0	4.11e-01	74.2%	88.7%
4xr7F02	1.10.287.3700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	41.0	4.16e-01	73.1%	88.9%
1ydmB00	3.40.50.10420	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like	0.57	37.0	2.98e-01	76.3%	33.5%
3hluA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	33.0	3.68e-01	95.7%	74.0%
2mlgA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	32.0	3.49e-01	76.3%	67.5%
8d3mI01	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.55	37.0	2.91e-01	80.6%	30.9%
3hy3A00	3.40.50.10420	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like	0.54	37.0	2.95e-01	76.3%	33.7%
1yj7B01	3.30.70.1530	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041	0.53	30.0	3.37e-01	81.7%	71.8%
6wo0A01	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.51	36.0	2.77e-01	73.1%	85.9%
2nyxB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	40.0	3.49e-01	84.9%	66.2%
1ub9A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	32.0	3.21e-01	89.2%	60.0%
3weeB03	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.50	35.0	3.33e-01	72.0%	70.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5011625	2008.1.1.57 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VirArc_Nuclease	0.84	75.0	5.75e-01	100.0%	45.1%
4284406	2008.1.1.13 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU	0.78	57.0	4.67e-01	100.0%	44.4%
4489860	2008.1.1.13 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU	0.75	55.0	4.47e-01	100.0%	43.0%
4293420	2008.1.1.13 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU	0.70	54.0	4.13e-01	100.0%	37.5%
4399888	327.16.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system	0.57	30.0	3.63e-01	78.5%	78.3%
4038796	327.16.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system	0.57	33.0	3.67e-01	87.1%	70.7%
3782651	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.54	36.0	3.86e-01	77.4%	80.0%
3347818	101.1.2.529 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7599	0.53	33.0	3.60e-01	90.3%	77.3%
4983426	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	33.0	3.53e-01	93.5%	72.5%
4996670	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	35.0	3.63e-01	95.7%	72.2%
3820802	101.1.2.529 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7599	0.51	36.0	3.45e-01	97.8%	61.8%
5079668	101.1.2.30 ↗	alpha arrays › HTH › HTH › winged helix domain › TrmB	0.51	32.0	3.34e-01	77.4%	68.2%
4996628	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	40.0	3.10e-01	86.0%	59.1%
4991130	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	33.0	3.00e-01	92.5%	47.7%