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QGA87232.1

Arc-Vir

MN496305__QGA87232.1__X__00024

Identity

Accession:
MN496305 ↗
Protein ID:
QGA87232.1 ↗
Kingdom:
archaea

Quality

84.7 mean pLDDT

Taxonomy

Fuselloviridae› Betafusellovirus› Sulfolobus_spindle-shaped_virus_SSV19

TaxID: 3035230

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-83
PDB
Domain cluster: rep: NC_004462.2__NP_777328.1__AV953_gp10__00010__D15-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25632.2 best Fusello_VP2_Capsid 99.6 1.40e-28 92.5% 83.8%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.84 71.0 5.30e-01 89.6% 41.7%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.80 51.0 5.87e-01 73.1% 89.8%
1qgtB00 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.80 55.0 4.24e-01 71.6% 35.0%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 57.0 6.12e-01 74.6% 96.6%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.79 49.0 5.89e-01 77.6% 95.6%
3qweA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 54.0 3.56e-01 71.6% 47.7%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.76 54.0 5.01e-01 74.6% 85.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 52.0 4.85e-01 71.6% 57.1%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.75 54.0 5.45e-01 74.6% 86.4%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.74 66.0 5.44e-01 100.0% 83.3%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.74 61.0 4.76e-01 89.6% 87.1%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.74 54.0 5.18e-01 77.6% 78.2%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 52.0 3.48e-01 74.6% 24.8%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 51.0 5.44e-01 74.6% 87.9%
6z0fA02 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.72 56.0 4.21e-01 86.6% 34.3%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.71 49.0 3.68e-01 70.1% 77.9%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.71 52.0 4.18e-01 77.6% 40.6%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.70 57.0 4.62e-01 88.1% 72.6%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.69 47.0 4.16e-01 70.1% 53.7%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 48.0 3.97e-01 76.1% 41.9%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.68 59.0 3.62e-01 100.0% 79.3%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 57.0 4.44e-01 95.5% 87.9%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 57.0 4.36e-01 92.5% 58.6%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 61.0 5.13e-01 100.0% 90.1%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.67 50.0 5.07e-01 100.0% 80.9%
1yq1A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 48.0 4.04e-01 76.1% 46.4%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 44.0 3.12e-01 94.0% 23.3%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 55.0 4.73e-01 97.0% 91.1%
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 52.0 3.96e-01 86.6% 66.4%
3c2gB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 55.0 3.26e-01 97.0% 20.3%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.63 46.0 3.74e-01 77.6% 46.0%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 55.0 4.59e-01 100.0% 78.6%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 52.0 4.56e-01 100.0% 92.1%
4fjqA02 1.50.10.130 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain 0.58 47.0 3.55e-01 91.0% 37.0%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 49.0 4.60e-01 100.0% 82.4%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.90e-01 94.0% 79.7%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.55 40.0 3.55e-01 79.1% 67.0%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.65e-01 86.6% 69.9%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 4.06e-01 85.1% 90.2%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 41.0 3.91e-01 97.0% 73.4%
2y0eB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 2.90e-01 91.0% 29.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3915878 3922.1.1.65 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C 0.95 65.0 4.31e-01 70.1% 21.6%
4972789 650.1.1.27 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Fusello_VP2_Capsid 0.92 83.0 8.43e-01 98.5% 98.5%
3449084 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.86 64.0 5.38e-01 77.6% 50.5%
3972992 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.86 63.0 6.41e-01 77.6% 78.5%
2570270 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.84 57.0 6.42e-01 73.1% 90.4%
3470751 3755.3.1.297 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.83 58.0 4.30e-01 73.1% 31.2%
3753969 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.83 60.0 5.18e-01 76.1% 54.0%
2055367 650.1.1.3 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA 0.82 59.0 5.84e-01 77.6% 71.4%
3903553 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.82 60.0 4.91e-01 76.1% 47.0%
4096686 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.82 56.0 5.11e-01 74.6% 55.3%
3979099 361.1.1.0 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.82 60.0 4.43e-01 76.1% 47.1%
3704373 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 59.0 4.80e-01 76.1% 43.3%
4010384 361.1.1.0 ↗ few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.81 61.0 6.22e-01 77.6% 84.6%
3588172 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.81 60.0 4.54e-01 77.6% 38.0%
4574972 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.81 58.0 6.08e-01 77.6% 83.3%
5020701 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.80 59.0 3.97e-01 77.6% 25.5%
3713201 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.80 58.0 4.42e-01 76.1% 37.2%
3634796 604.11.1.4 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › zf-CCCH_6 0.79 73.0 6.77e-01 97.0% 81.2%
3553835 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.79 59.0 5.49e-01 79.1% 65.0%
3592737 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.79 63.0 6.39e-01 89.6% 86.2%
3581757 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.79 58.0 3.93e-01 77.6% 24.4%
3996708 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 68.0 5.34e-01 92.5% 83.8%
3391939 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.78 63.0 5.20e-01 86.6% 93.9%
5049657 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.78 59.0 3.87e-01 80.6% 64.4%
3461533 3755.3.1.610 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UPF0114 0.78 56.0 4.53e-01 76.1% 60.0%
3705683 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 57.0 4.95e-01 77.6% 56.0%
3358888 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.76 69.0 5.69e-01 95.5% 64.5%
4266228 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.76 57.0 3.49e-01 77.6% 15.1%
3870850 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 55.0 4.12e-01 76.1% 33.8%
3987696 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 55.0 4.07e-01 76.1% 43.6%
3618935 192.15.1.77 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.76 61.0 5.05e-01 86.6% 90.4%
3857829 2485.1.1.17 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.75 62.0 5.19e-01 88.1% 94.5%
3555578 633.22.1.15 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 0.75 62.0 5.19e-01 88.1% 94.5%
3946793 101.1.1.259 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Terminase_5 0.75 61.0 5.04e-01 86.6% 74.8%
3531403 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.75 53.0 6.04e-01 74.6% 100.0%
3188860 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 56.0 3.90e-01 79.1% 26.5%
4180990 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 66.0 6.19e-01 97.0% 88.7%
3800736 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 63.0 3.97e-01 91.0% 73.5%
3505507 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.73 62.0 6.16e-01 89.6% 92.9%
3226578 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.73 60.0 5.05e-01 86.6% 61.0%
3389963 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.73 65.0 6.43e-01 95.5% 92.9%
3230196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 57.0 4.74e-01 86.6% 61.7%
3901917 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.72 61.0 6.01e-01 88.1% 85.7%
3722750 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.71 64.0 4.09e-01 100.0% 52.8%
4024559 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.70 63.0 4.59e-01 100.0% 47.2%
4043617 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.69 62.0 4.04e-01 100.0% 33.7%
5065734 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.68 58.0 5.21e-01 92.5% 83.3%
4027007 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 56.0 4.23e-01 91.0% 38.7%
3270632 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.65 58.0 4.22e-01 100.0% 91.0%
3786830 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.64 54.0 3.79e-01 94.0% 63.6%
3633320 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.63 54.0 3.63e-01 97.0% 70.0%
3855880 622.4.1.19 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › CD20 0.62 57.0 4.87e-01 100.0% 87.6%
1144608 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.61 53.0 4.51e-01 100.0% 93.0%
3792329 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.61 53.0 3.65e-01 100.0% 57.6%
4015003 109.10.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.61 52.0 3.65e-01 100.0% 54.8%
3970345 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.59 50.0 3.34e-01 100.0% 55.3%
4668518 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.54 44.0 3.10e-01 100.0% 27.7%
4976066 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 46.0 4.32e-01 97.0% 98.8%
4301843 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.51 39.0 2.97e-01 89.6% 65.6%