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MN504636.1__QFR59663.1__QuinobequinP09_24__00062

Bact-Vir

MN504636.1__QFR59663.1__QuinobequinP09_24__00062

Identity

Accession:
MN504636 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nipunavirus› Pseudomonas_phage_Quinobequin-P09

TaxID: 2660687

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-23_133-190
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d05A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.79 64.0 6.50e-01 93.5% 88.2%
6rarI01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.75 66.0 4.79e-01 93.5% 99.0%
1fviA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.75 67.0 6.65e-01 93.5% 91.1%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.75 66.0 6.48e-01 94.8% 88.0%
6imjA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.75 65.0 4.79e-01 93.5% 99.5%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.74 61.0 6.40e-01 96.1% 95.8%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.70 63.0 6.16e-01 98.7% 97.6%
1vs0A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 55.0 5.53e-01 96.1% 85.5%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 40.0 2.86e-01 80.5% 88.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1245394 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.75 68.0 4.96e-01 96.1% 95.2%
5039677 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.74 67.0 4.70e-01 97.4% 91.8%
3454962 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.52 32.0 3.60e-01 79.2% 92.0%
D2 medium residues 24-132
PDB
Domain cluster: rep: ATP-dependent_DNA_ligase__YP_009094561__Melbournevirus__1560514__D164-283