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MN508356.1__QFR59697.1__VBApiPXC38_10__00010
Bact-VirMN508356.1__QFR59697.1__VBApiPXC38_10__00010
Identity
- Accession:
- MN508356 ↗
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Exceevirus›
Acinetobacter_phage_VB_ApiP_XC38
TaxID: 2655002
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 407-472
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.86 | 75.0 | 5.94e-01 | 100.0% | 49.6% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 62.0 | 6.31e-01 | 83.3% | 95.3% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.77 | 64.0 | 6.42e-01 | 92.4% | 89.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 66.0 | 5.68e-01 | 98.5% | 61.8% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 63.0 | 5.92e-01 | 100.0% | 75.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.75 | 58.0 | 5.54e-01 | 93.9% | 72.4% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 65.0 | 6.32e-01 | 93.9% | 86.1% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 56.0 | 5.74e-01 | 81.8% | 96.9% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 65.0 | 5.94e-01 | 100.0% | 76.1% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.73 | 58.0 | 5.00e-01 | 92.4% | 55.9% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 62.0 | 5.32e-01 | 100.0% | 60.8% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 54.0 | 5.39e-01 | 81.8% | 95.5% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 57.0 | 5.56e-01 | 87.9% | 85.9% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.70 | 60.0 | 5.50e-01 | 100.0% | 82.2% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 55.0 | 4.95e-01 | 97.0% | 63.0% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 62.0 | 5.19e-01 | 100.0% | 87.3% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 59.0 | 5.67e-01 | 97.0% | 86.7% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.68 | 59.0 | 5.39e-01 | 100.0% | 74.2% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.67 | 52.0 | 4.81e-01 | 84.8% | 80.0% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.67 | 51.0 | 4.54e-01 | 81.8% | 60.6% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 50.0 | 5.05e-01 | 100.0% | 80.9% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 54.0 | 5.30e-01 | 92.4% | 84.9% |
| 2ex3B01 | 6.10.250.960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 51.0 | 4.91e-01 | 89.4% | 71.1% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 61.0 | 5.78e-01 | 100.0% | 88.3% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.67 | 57.0 | 4.97e-01 | 100.0% | 63.0% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.66 | 53.0 | 4.80e-01 | 92.4% | 65.3% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 47.0 | 4.88e-01 | 81.8% | 82.0% |
| 3vkgB06 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.65 | 56.0 | 3.82e-01 | 97.0% | 26.5% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.65 | 56.0 | 4.34e-01 | 92.4% | 47.0% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.63 | 44.0 | 4.38e-01 | 98.5% | 70.0% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 46.0 | 4.72e-01 | 100.0% | 87.5% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 52.0 | 5.27e-01 | 98.5% | 100.0% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.62 | 50.0 | 4.83e-01 | 92.4% | 78.9% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 51.0 | 4.91e-01 | 92.4% | 82.7% |
| 2ipcA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.58 | 51.0 | 3.47e-01 | 98.5% | 26.9% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 42.0 | 4.58e-01 | 78.8% | 98.1% |
| 3fd0A01 | 3.90.1150.60 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain | 0.55 | 48.0 | 3.38e-01 | 93.9% | 88.1% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.14e-01 | 80.3% | 37.6% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 43.0 | 3.64e-01 | 93.9% | 80.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010706 | 1.1.7.98 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25876 | 0.87 | 65.0 | 6.40e-01 | 100.0% | 74.3% |
| 5051222 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.82 | 67.0 | 5.62e-01 | 97.0% | 53.6% |
| 3498458 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 74.0 | 5.39e-01 | 100.0% | 80.6% |
| 3184140 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.78 | 69.0 | 5.62e-01 | 100.0% | 54.8% |
| 3897507 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.75 | 63.0 | 5.44e-01 | 100.0% | 60.0% |
| 5039649 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 66.0 | 5.43e-01 | 100.0% | 55.8% |
| 3911171 | 192.7.1.44 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › SHCBP_N | 0.74 | 61.0 | 5.47e-01 | 89.4% | 73.3% |
| 3453933 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.73 | 67.0 | 5.56e-01 | 100.0% | 67.3% |
| 4929436 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.72 | 63.0 | 5.97e-01 | 100.0% | 87.5% |
| 3787585 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.72 | 65.0 | 5.55e-01 | 100.0% | 62.9% |
| 5002748 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.71 | 60.0 | 5.81e-01 | 95.5% | 84.0% |
| 4182291 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.70 | 64.0 | 4.22e-01 | 100.0% | 50.2% |
| 5049641 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 55.0 | 5.35e-01 | 92.4% | 77.3% |
| 3727638 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.69 | 60.0 | 3.41e-01 | 100.0% | 9.9% |
| 3494198 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.69 | 57.0 | 4.05e-01 | 100.0% | 31.1% |
| 5002294 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.69 | 59.0 | 4.20e-01 | 100.0% | 31.6% |
| 3628093 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.69 | 61.0 | 5.25e-01 | 100.0% | 62.9% |
| 3719776 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.68 | 58.0 | 4.16e-01 | 100.0% | 37.7% |
| 3516641 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 61.0 | 4.56e-01 | 100.0% | 58.7% |
| 4273738 | 5069.1.1.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB | 0.67 | 60.0 | 4.09e-01 | 98.5% | 28.4% |
| 5030936 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.67 | 57.0 | 4.10e-01 | 95.5% | 33.8% |
| 3079134 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 58.0 | 3.75e-01 | 100.0% | 21.6% |
| None | — | 0.67 | 59.0 | 3.80e-01 | 98.5% | 57.7% | |
| 4617177 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 58.0 | 5.09e-01 | 100.0% | 72.0% |
| 5020922 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.66 | 57.0 | 5.00e-01 | 100.0% | 63.8% |
| 4399761 | 192.29.1.166 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PsiE | 0.66 | 56.0 | 4.61e-01 | 100.0% | 63.1% |
| 4170329 | 605.1.1.158 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PsiE | 0.66 | 56.0 | 4.62e-01 | 100.0% | 50.8% |
| 4532729 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.65 | 61.0 | 5.13e-01 | 100.0% | 63.8% |
| 1389315 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 55.0 | 4.94e-01 | 100.0% | 67.0% |
| 3314055 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.65 | 55.0 | 5.33e-01 | 93.9% | 81.1% |
| 3264065 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 55.0 | 5.23e-01 | 98.5% | 83.7% |
| 4116779 | 603.1.1.174 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA | 0.65 | 55.0 | 5.32e-01 | 100.0% | 89.3% |
| 3742136 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.64 | 50.0 | 4.81e-01 | 86.4% | 74.7% |
| 5050359 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.63 | 49.0 | 4.89e-01 | 90.9% | 82.9% |
| 4684 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.62 | 50.0 | 5.06e-01 | 97.0% | 95.4% |
| 3684835 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.60 | 51.0 | 4.62e-01 | 98.5% | 68.4% |
| 1714789 | 3660.1.1.1 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › SecG | 0.58 | 49.0 | 4.72e-01 | 95.5% | 85.3% |
D2
medium
residues 17-145
Domain cluster:
rep: OP745480.1__WAI96132.1__X__00015__D13-131
D3
medium
residues 146-229
Domain cluster:
representative
D4
medium
residues 247-314
Domain cluster:
representative
D5
medium
residues 315-403
Domain cluster:
representative