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MN508356.1__QFR59720.1__VBApiPXC38_33__00033

Bact-Vir

MN508356.1__QFR59720.1__VBApiPXC38_33__00033

Identity

Accession:
MN508356 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Exceevirus› Acinetobacter_phage_VB_ApiP_XC38

TaxID: 2655002

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.69 52.0 4.44e-01 80.9% 94.5%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.68 58.0 4.21e-01 98.5% 51.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.70e-01 92.6% 71.0%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 57.0 4.43e-01 100.0% 95.6%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.66 56.0 5.21e-01 97.1% 100.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.66 53.0 4.72e-01 92.6% 85.6%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.66 44.0 3.04e-01 70.6% 66.1%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.66 57.0 4.64e-01 100.0% 78.9%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.58e-01 94.1% 80.9%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.62e-01 94.1% 77.8%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 52.0 4.14e-01 89.7% 96.4%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 44.0 3.10e-01 75.0% 44.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.39e-01 94.1% 66.7%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 53.0 4.34e-01 97.1% 99.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.61 52.0 4.64e-01 98.5% 88.0%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 4.59e-01 98.5% 95.1%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 52.0 4.97e-01 100.0% 93.9%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.49e-01 98.5% 75.0%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.60 44.0 3.51e-01 79.4% 83.9%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 46.0 2.97e-01 83.8% 87.0%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 49.0 3.21e-01 91.2% 54.5%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.59 52.0 4.46e-01 100.0% 81.2%
3hz6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 2.94e-01 77.9% 93.6%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 3.03e-01 85.3% 24.6%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 2.94e-01 91.2% 35.7%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 46.0 3.03e-01 85.3% 72.3%
1z6nA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 46.0 3.49e-01 86.8% 89.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.25e-01 94.1% 100.0%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.57 48.0 3.71e-01 94.1% 84.6%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.27e-01 100.0% 95.6%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.57 39.0 2.97e-01 79.4% 30.8%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.60e-01 88.2% 54.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.56 42.0 4.08e-01 98.5% 72.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 48.0 3.65e-01 100.0% 48.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 40.0 2.84e-01 79.4% 97.1%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.79e-01 92.6% 65.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 4.18e-01 98.5% 95.5%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 4.06e-01 98.5% 100.0%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.48e-01 77.9% 94.9%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 2.64e-01 76.5% 94.3%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.71e-01 86.8% 67.7%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.11e-01 89.7% 100.0%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.12e-01 92.6% 84.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.92e-01 100.0% 87.1%
2vz8A04 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 43.0 2.92e-01 92.6% 54.7%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.71e-01 85.3% 84.6%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.51 40.0 3.21e-01 88.2% 95.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479384 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.15e-01 94.1% 52.4%
1121949 9.21.1.1 ↗ beta barrels › Lipocalins/Streptavidin › hypothetical protein BACUNI_03114 › hypothetical protein BACUNI_03114 › Lipocalin_4 0.69 52.0 4.44e-01 80.9% 94.5%
3882269 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.68 57.0 4.97e-01 94.1% 82.9%
2581402 5.1.5.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.68 53.0 3.47e-01 83.8% 27.0%
3570691 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.66 55.0 4.76e-01 94.1% 69.1%
3166548 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.65 53.0 4.44e-01 94.1% 74.4%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 53.0 4.86e-01 92.6% 85.6%
4946633 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.64 50.0 3.10e-01 85.3% 19.3%
3800251 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.71e-01 82.4% 78.7%
3436556 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.62 52.0 5.04e-01 92.6% 92.0%
3264806 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.77e-01 94.1% 98.0%
3936038 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.62 52.0 4.42e-01 94.1% 77.9%
3720177 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 51.0 3.54e-01 92.6% 95.7%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 41.0 4.45e-01 97.1% 87.3%
3744119 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.61 45.0 3.33e-01 92.6% 28.5%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.61 51.0 4.86e-01 92.6% 91.1%
3715024 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 51.0 4.69e-01 92.6% 85.6%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.61 52.0 4.74e-01 98.5% 94.6%
863 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.61 52.0 4.58e-01 98.5% 94.2%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.61 50.0 4.81e-01 92.6% 86.3%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.60 42.0 4.71e-01 98.5% 100.0%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 40.0 4.49e-01 97.1% 96.0%
5043543 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 49.0 3.30e-01 91.2% 43.7%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.60 43.0 4.65e-01 100.0% 94.5%
4078246 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.60 51.0 4.98e-01 98.5% 98.7%
3614414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.54e-01 97.1% 89.7%
3393983 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.60 50.0 4.28e-01 94.1% 63.6%
3751478 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.60 50.0 4.84e-01 92.6% 90.7%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.81e-01 100.0% 89.2%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 4.20e-01 89.7% 100.0%
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 38.0 4.36e-01 92.6% 100.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 40.0 3.99e-01 97.1% 68.6%
3722745 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 49.0 4.70e-01 92.6% 88.7%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 5.11e-01 100.0% 96.0%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.58 38.0 4.32e-01 85.3% 100.0%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.58 40.0 3.83e-01 94.1% 61.3%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.58 48.0 4.44e-01 98.5% 97.9%
3347851 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 40.0 4.02e-01 100.0% 72.9%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.57 44.0 3.29e-01 97.1% 33.1%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 40.0 4.14e-01 97.1% 80.0%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 38.0 4.25e-01 91.2% 96.0%
5055711 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.56 45.0 2.90e-01 91.2% 24.6%
3774821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.59e-01 100.0% 98.3%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.22e-01 100.0% 94.5%
3713696 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.55 46.0 2.89e-01 91.2% 28.5%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.52e-01 100.0% 98.3%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.55 43.0 4.01e-01 97.1% 68.2%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.27e-01 100.0% 91.7%
3212894 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.93e-01 86.8% 24.9%
3625066 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.05e-01 92.6% 33.5%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.55 43.0 4.17e-01 89.7% 81.2%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.55 39.0 3.58e-01 100.0% 55.8%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.69e-01 100.0% 58.9%
3481353 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.87e-01 92.6% 91.3%
5022781 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 38.0 2.45e-01 75.0% 36.2%
5035481 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.54 39.0 3.19e-01 94.1% 40.0%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.84e-01 100.0% 72.0%
3491951 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.53 43.0 2.82e-01 92.6% 90.0%
5010111 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 40.0 3.44e-01 86.8% 90.4%
4274998 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.53 41.0 2.51e-01 88.2% 18.8%
3781209 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.51 45.0 3.97e-01 100.0% 67.0%
5009316 11.1.1.1439 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29294 0.51 43.0 3.13e-01 97.1% 61.0%
3264242 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.51 40.0 2.62e-01 94.1% 59.0%
4002679 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.51 44.0 3.65e-01 97.1% 99.2%
3404272 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 3.30e-01 97.1% 70.6%
5052460 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 37.0 2.45e-01 83.8% 63.6%