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MN508356.1__QFR59779.1__VBApiPXC38_92__00092
Bact-VirMN508356.1__QFR59779.1__VBApiPXC38_92__00092
Identity
- Accession:
- MN508356 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Exceevirus›
Acinetobacter_phage_VB_ApiP_XC38
TaxID: 2655002
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-91
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.79 | 63.0 | 4.21e-01 | 85.2% | 24.9% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 55.0 | 5.01e-01 | 85.2% | 54.9% |
| 1a8rA01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.74 | 57.0 | 5.10e-01 | 83.6% | 62.4% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.72 | 53.0 | 5.13e-01 | 78.7% | 79.4% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.70 | 54.0 | 4.96e-01 | 82.0% | 64.9% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.69 | 50.0 | 3.65e-01 | 83.6% | 27.3% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.67 | 49.0 | 4.67e-01 | 78.7% | 71.2% |
| 2d68A00 | 1.20.960.40 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.65 | 44.0 | 4.11e-01 | 72.1% | 57.3% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.64 | 47.0 | 3.99e-01 | 80.3% | 47.1% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 46.0 | 4.29e-01 | 80.3% | 63.3% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 43.0 | 4.07e-01 | 72.1% | 59.5% |
| 2p35A02 | 1.10.150.290 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › S-adenosyl-L-methionine-dependent methyltransferases | 0.61 | 42.0 | 4.05e-01 | 72.1% | 64.3% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 40.0 | 3.67e-01 | 70.5% | 57.3% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 43.0 | 4.04e-01 | 85.2% | 61.3% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 40.0 | 3.84e-01 | 72.1% | 77.5% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.57 | 41.0 | 3.76e-01 | 78.7% | 56.5% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.56 | 40.0 | 3.21e-01 | 80.3% | 62.0% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 42.0 | 3.15e-01 | 85.2% | 75.8% |
| 2aplA02 | 1.10.8.340 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.54 | 46.0 | 4.21e-01 | 96.7% | 82.7% |
| 2hwjA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 41.0 | 4.15e-01 | 95.1% | 88.5% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.53 | 45.0 | 3.63e-01 | 93.4% | 51.8% |
| 1pjrA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 3.75e-01 | 83.6% | 94.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4154589 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.82 | 68.0 | 4.85e-01 | 90.2% | 32.9% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.74 | 61.0 | 4.64e-01 | 90.2% | 59.3% |
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.71 | 54.0 | 5.22e-01 | 83.6% | 91.4% |
| 3930942 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.66 | 58.0 | 4.95e-01 | 100.0% | 98.0% |
| 3372157 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.64 | 54.0 | 4.92e-01 | 96.7% | 72.9% |
| 5022551 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.62 | 46.0 | 3.82e-01 | 83.6% | 65.0% |
| 4051415 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.61 | 42.0 | 3.77e-01 | 70.5% | 56.5% |
| 5039692 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 48.0 | 4.15e-01 | 85.2% | 57.9% |
| 5006542 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 41.0 | 4.13e-01 | 72.1% | 78.3% |
| 3333417 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.58 | 40.0 | 3.49e-01 | 72.1% | 52.2% |
| 3596143 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.56 | 41.0 | 3.99e-01 | 78.7% | 82.9% |
| 5027990 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.56 | 39.0 | 3.59e-01 | 72.1% | 57.7% |
| 5043558 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.55 | 40.0 | 3.80e-01 | 78.7% | 78.4% |
| 3732913 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.54 | 43.0 | 3.29e-01 | 98.4% | 55.4% |
| 2556087 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.53 | 39.0 | 3.61e-01 | 78.7% | 65.4% |
| 4933898 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.52 | 37.0 | 3.54e-01 | 80.3% | 64.1% |