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MN508817.1__QFR55661.1__JC221_015__00015

Bact-Vir

MN508817.1__QFR55661.1__JC221_015__00015

Identity

Accession:
MN508817 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Yersinia_phage_JC221

TaxID: 2654973

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-64
PDB
Domain cluster: rep: NC_041925.1__YP_009600610.1__QIH99_gp28__00028__D2-51
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v19I01 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.62 42.0 4.25e-01 98.2% 70.2%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.62 42.0 4.39e-01 100.0% 78.8%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 51.0 3.91e-01 100.0% 40.3%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.74e-01 98.2% 83.6%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.68e-01 100.0% 39.7%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.57 49.0 4.19e-01 100.0% 58.8%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.12e-01 100.0% 83.0%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.74e-01 100.0% 65.1%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.55 44.0 3.73e-01 98.2% 99.1%
1miwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 38.0 2.95e-01 73.7% 80.6%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.53 41.0 3.99e-01 100.0% 74.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3539447 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.65 56.0 4.77e-01 98.2% 88.4%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.14e-01 100.0% 83.1%
4036040 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.63 43.0 4.36e-01 98.2% 72.7%
3980140 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.62 48.0 3.77e-01 98.2% 37.8%
3441976 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.59 47.0 3.68e-01 100.0% 39.3%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 43.0 3.34e-01 100.0% 36.0%
3700745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.31e-01 94.7% 88.0%
5054668 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.02e-01 93.0% 86.7%
3235789 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.57 42.0 4.30e-01 82.5% 94.5%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 45.0 3.61e-01 100.0% 79.2%
3278865 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.52 39.0 3.85e-01 86.0% 92.3%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.69e-01 93.0% 79.3%