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MN508817.1__QFR55673.1__JC221_027__00027

Bact-Vir

MN508817.1__QFR55673.1__JC221_027__00027

Identity

Accession:
MN508817 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23945.2 best DUF7279 55.5 5.40e-15 81.8% 90.6%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.77 59.0 4.63e-01 100.0% 40.4%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.76 50.0 3.68e-01 74.5% 28.1%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.75 66.0 4.46e-01 100.0% 35.4%
1ap8A00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.71 52.0 3.52e-01 80.0% 41.3%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 45.0 2.73e-01 80.0% 9.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.68 53.0 4.64e-01 92.7% 57.5%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 46.0 3.71e-01 74.5% 76.8%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 45.0 3.22e-01 96.4% 24.4%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 4.01e-01 72.7% 98.7%
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 47.0 3.40e-01 80.0% 34.3%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.61 52.0 4.32e-01 98.2% 81.6%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.88e-01 92.7% 44.9%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.25e-01 100.0% 55.3%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 46.0 4.09e-01 96.4% 55.8%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 4.45e-01 100.0% 70.7%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 49.0 3.25e-01 92.7% 93.7%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.35e-01 78.2% 38.2%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 3.90e-01 98.2% 55.8%
2ljuA01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.58 47.0 4.30e-01 90.9% 93.3%
6qm7K00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 45.0 3.05e-01 94.5% 23.3%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 48.0 3.91e-01 100.0% 70.7%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.35e-01 76.4% 69.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.74e-01 98.2% 42.5%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 44.0 3.73e-01 87.3% 100.0%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 41.0 3.36e-01 81.8% 89.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 46.0 3.82e-01 94.5% 97.0%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.69e-01 87.3% 93.5%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.54 47.0 3.24e-01 100.0% 43.7%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.82e-01 94.5% 25.6%
1v4pA02 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.54 42.0 4.46e-01 83.6% 100.0%
5esyA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 44.0 2.92e-01 94.5% 23.4%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.26e-01 92.7% 57.2%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 2.76e-01 78.2% 59.8%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 32.0 2.56e-01 70.9% 24.3%
8p2bA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 32.0 2.95e-01 70.9% 42.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 40.0 3.07e-01 96.4% 48.1%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.07e-01 90.9% 64.3%
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.21e-01 74.5% 81.0%
5vybA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 39.0 3.01e-01 85.5% 52.4%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 36.0 2.91e-01 80.0% 59.3%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607377 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.72 62.0 4.56e-01 96.4% 71.7%
3284762 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.72 50.0 3.71e-01 74.5% 55.2%
135631 4090.1.1.1 a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.70 55.0 3.94e-01 87.3% 85.5%
3682250 223.1.1.28 a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N 0.70 59.0 4.19e-01 100.0% 37.8%
4985600 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.70 52.0 4.59e-01 87.3% 55.0%
3674400 223.1.1.28 a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N 0.69 59.0 4.34e-01 100.0% 43.1%
4452334 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.69 62.0 4.42e-01 100.0% 41.1%
None 0.69 59.0 4.18e-01 100.0% 38.9%
3838066 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.69 59.0 4.29e-01 98.2% 40.5%
3840585 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.68 56.0 3.80e-01 89.1% 100.0%
3931963 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 55.0 4.28e-01 90.9% 54.4%
None 0.68 57.0 4.25e-01 100.0% 45.2%
4970447 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.68 40.0 3.29e-01 70.9% 31.0%
4042155 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.67 59.0 4.28e-01 100.0% 41.3%
3182794 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 58.0 4.36e-01 100.0% 42.0%
3643800 813.1.1.1 a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone 0.67 48.0 3.16e-01 76.4% 19.6%
4977355 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.66 54.0 3.72e-01 92.7% 26.3%
3877244 225.2.1.2 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › SLFN_GTPase-like 0.66 45.0 3.02e-01 70.9% 20.0%
4113896 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.66 58.0 4.14e-01 100.0% 35.8%
3779694 2004.1.1.356 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN_GTPase-like 0.66 45.0 2.60e-01 70.9% 8.3%
4026251 2492.1.1.8 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.66 48.0 3.33e-01 80.0% 28.4%
3507601 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 51.0 4.15e-01 85.5% 49.5%
3575298 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.66 53.0 4.31e-01 92.7% 56.4%
3230768 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.65 48.0 3.31e-01 98.2% 22.6%
4314572 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.65 56.0 4.59e-01 96.4% 92.0%
3987365 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.64 56.0 4.94e-01 98.2% 68.8%
3963585 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 52.0 4.26e-01 92.7% 55.2%
3789023 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.63 56.0 4.02e-01 100.0% 56.1%
3396324 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 48.0 4.54e-01 81.8% 78.5%
3285204 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.62 44.0 3.44e-01 76.4% 75.2%
3934558 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.33e-01 100.0% 22.8%
5044642 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.62 54.0 3.49e-01 98.2% 39.6%
3926425 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.61 50.0 4.15e-01 90.9% 68.0%
3290978 281.1.1.1 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.61 49.0 3.61e-01 92.7% 88.1%
3197197 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 52.0 4.28e-01 100.0% 69.5%
3627521 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 52.0 4.33e-01 100.0% 54.0%
3797650 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 52.0 4.31e-01 100.0% 54.0%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.60 41.0 3.36e-01 72.7% 40.7%
4426056 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.60 49.0 3.51e-01 89.1% 80.6%
3239004 2003.1.10.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Synapsin 0.60 38.0 3.19e-01 85.5% 37.9%
5020520 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.59 41.0 3.46e-01 72.7% 84.4%
3980522 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.59 50.0 3.25e-01 96.4% 86.1%
3238035 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 39.0 4.11e-01 80.0% 78.0%
3455792 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.58 45.0 2.77e-01 83.6% 29.5%
5018105 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 39.0 2.78e-01 70.9% 23.6%
5054847 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 47.0 3.83e-01 100.0% 50.0%
3629963 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.57 46.0 4.03e-01 100.0% 55.6%
4033192 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 3.75e-01 100.0% 83.1%
3601975 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.98e-01 100.0% 23.1%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.33e-01 90.9% 33.8%
3479639 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 45.0 3.10e-01 92.7% 85.7%
5051502 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 45.0 3.25e-01 92.7% 33.1%
4290772 825.1.1.2 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.56 40.0 2.61e-01 76.4% 71.9%
3457412 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 46.0 3.00e-01 96.4% 28.9%
4110113 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.55 39.0 2.58e-01 74.5% 18.3%
3290954 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 42.0 3.64e-01 90.9% 50.5%
1952792 7569.1.1.1 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.55 41.0 2.78e-01 83.6% 54.7%
3466098 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.55 47.0 2.95e-01 100.0% 25.9%
3859768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.02e-01 87.3% 32.6%
4889666 11.2.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.54 39.0 3.23e-01 83.6% 39.8%
5037743 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 37.0 3.00e-01 70.9% 37.1%
3372534 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 44.0 3.25e-01 92.7% 44.5%
3176450 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.53 42.0 3.37e-01 85.5% 79.8%
3576376 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.53 43.0 2.95e-01 100.0% 29.2%
5018285 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.53 36.0 2.91e-01 72.7% 40.0%
4011051 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.91e-01 85.5% 28.7%
3190761 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.53 36.0 2.97e-01 72.7% 38.2%
3264290 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 43.0 3.13e-01 100.0% 94.3%
4004698 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.51 43.0 3.96e-01 98.2% 76.0%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 42.0 2.51e-01 100.0% 25.6%
3233897 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 2.86e-01 85.5% 35.8%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.50 38.0 2.15e-01 96.4% 6.4%