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MN508817.1__QFR55687.1__JC221_041__00041

Bact-Vir

MN508817.1__QFR55687.1__JC221_041__00041

Identity

Accession:
MN508817 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24024.2 best DUF7336 30.0 4.80e-07 100.0% 86.7%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.80 71.0 5.86e-01 98.1% 89.0%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.80 70.0 5.95e-01 98.1% 97.6%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.79 62.0 5.23e-01 100.0% 50.5%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.78 57.0 4.31e-01 78.8% 80.3%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 66.0 5.32e-01 100.0% 88.9%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.74 54.0 5.25e-01 78.8% 74.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 60.0 4.29e-01 98.1% 90.4%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 4.98e-01 100.0% 86.7%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 4.92e-01 98.1% 81.6%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.68 53.0 4.31e-01 100.0% 44.9%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.68 53.0 4.20e-01 100.0% 41.9%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.68 56.0 3.69e-01 100.0% 39.1%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 56.0 4.47e-01 100.0% 46.6%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.67 54.0 4.83e-01 96.2% 100.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 53.0 5.02e-01 100.0% 75.8%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.65 54.0 5.03e-01 98.1% 79.4%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.65 56.0 4.14e-01 100.0% 94.3%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.64 55.0 4.58e-01 100.0% 78.9%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 54.0 4.55e-01 100.0% 91.5%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 52.0 3.96e-01 98.1% 50.0%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.63 54.0 4.94e-01 100.0% 87.3%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 54.0 4.75e-01 100.0% 97.5%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.63 53.0 5.09e-01 100.0% 82.5%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 47.0 4.04e-01 100.0% 48.4%
6jkvA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 49.0 3.41e-01 100.0% 31.3%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 52.0 3.43e-01 100.0% 46.2%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 50.0 4.12e-01 100.0% 47.7%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.61 52.0 3.96e-01 100.0% 39.1%
4oj3B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.33e-01 100.0% 83.2%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.31e-01 100.0% 53.0%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 43.0 3.13e-01 75.0% 51.0%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 42.0 3.21e-01 100.0% 28.3%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.61 46.0 4.68e-01 98.1% 94.0%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 43.0 3.13e-01 76.9% 34.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 50.0 4.07e-01 100.0% 50.5%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 50.0 4.21e-01 98.1% 71.3%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 49.0 4.01e-01 100.0% 47.2%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 52.0 4.18e-01 100.0% 53.8%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.60 51.0 4.06e-01 100.0% 56.8%
3kwuA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 49.0 3.69e-01 100.0% 37.0%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.80e-01 98.1% 50.0%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.78e-01 100.0% 72.9%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 47.0 4.04e-01 100.0% 56.2%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.58 49.0 3.37e-01 100.0% 54.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.58 50.0 4.34e-01 100.0% 92.9%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.57 46.0 4.03e-01 86.5% 66.7%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 47.0 3.53e-01 100.0% 36.4%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 2.91e-01 75.0% 51.0%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.58e-01 100.0% 48.2%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.56 46.0 3.06e-01 96.2% 37.7%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.55 38.0 2.89e-01 75.0% 81.9%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.53e-01 100.0% 67.2%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 49.0 3.16e-01 100.0% 40.5%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 4.02e-01 100.0% 85.9%
4dxaB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.04e-01 75.0% 99.0%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.51 42.0 3.45e-01 100.0% 49.1%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 37.0 2.91e-01 100.0% 31.8%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 41.0 3.31e-01 100.0% 70.6%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065393 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.73 62.0 5.02e-01 98.1% 74.8%
4966263 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.69 59.0 4.62e-01 98.1% 67.8%
3952578 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.68 50.0 3.29e-01 82.7% 17.6%
4984422 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.67 57.0 4.49e-01 98.1% 67.8%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 54.0 5.55e-01 100.0% 96.0%
3970813 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.66 54.0 4.64e-01 100.0% 94.7%
4943770 304.110.1.12 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › zf-HYPF 0.66 56.0 4.55e-01 100.0% 76.2%
4998414 329.1.1.2 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 0.65 46.0 3.54e-01 75.0% 85.0%
3761694 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.65 55.0 4.56e-01 98.1% 69.5%
5081105 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.65 54.0 4.50e-01 100.0% 77.0%
5050778 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.64 54.0 4.79e-01 100.0% 96.2%
4056382 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.63 54.0 4.49e-01 100.0% 84.7%
3958050 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.63 54.0 4.59e-01 100.0% 87.8%
3252117 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 49.0 3.16e-01 100.0% 16.3%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.63 52.0 4.07e-01 100.0% 43.6%
4032618 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.63 51.0 5.12e-01 98.1% 92.7%
4949011 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.63 53.0 4.51e-01 100.0% 87.8%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.63 53.0 5.09e-01 100.0% 82.5%
4085827 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.62 52.0 4.49e-01 100.0% 87.8%
3602859 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 4.28e-01 100.0% 54.4%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 50.0 3.77e-01 100.0% 47.3%
4180988 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.61 49.0 3.25e-01 100.0% 20.1%
3474293 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.04e-01 71.2% 24.7%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 50.0 3.77e-01 100.0% 36.8%
5026370 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.60 51.0 4.25e-01 100.0% 80.8%
5006560 3115.5.1.2 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PF27350 0.60 52.0 4.66e-01 100.0% 86.7%
1309233 3145.1.1.1 beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C 0.60 51.0 3.78e-01 100.0% 35.1%
5042490 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.60 50.0 4.20e-01 100.0% 79.0%
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.30e-01 78.8% 81.5%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.59 47.0 4.04e-01 100.0% 53.3%
3366484 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 49.0 3.15e-01 98.1% 90.7%
3497850 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 2.98e-01 75.0% 63.6%
3213931 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 46.0 3.69e-01 100.0% 53.8%
4977431 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 48.0 4.55e-01 100.0% 80.0%
4869120 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 48.0 3.88e-01 100.0% 45.5%
3407846 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 47.0 3.94e-01 98.1% 65.0%
3586595 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.58 46.0 3.83e-01 100.0% 47.3%
3874516 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.57 40.0 2.52e-01 78.8% 65.0%
4203413 109.3.1.218 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_KRIT1 0.57 49.0 3.13e-01 100.0% 23.3%
3213999 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 47.0 2.88e-01 100.0% 91.0%
3553704 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.56 46.0 4.00e-01 100.0% 91.1%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.56 39.0 2.93e-01 71.2% 31.4%
4008896 11.1.1.1286 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.56 38.0 3.04e-01 75.0% 97.6%
5052820 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.29e-01 100.0% 48.4%
4943853 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.18e-01 88.5% 83.4%
3218243 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 47.0 4.01e-01 100.0% 80.0%
4000746 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 41.0 3.47e-01 84.6% 78.7%
3840071 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 2.85e-01 98.1% 93.4%
5053150 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.35e-01 100.0% 61.3%
3538232 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.53 43.0 3.21e-01 100.0% 53.1%
3780458 223.2.1.51 a+b three layers › Profilin-like › profilin-like › profilin-like › Njmu-R1 0.53 47.0 3.43e-01 100.0% 65.7%
3168866 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.52 46.0 3.26e-01 100.0% 51.2%
4418856 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.52 47.0 3.14e-01 100.0% 43.2%
3244753 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.12e-01 100.0% 45.4%
4284019 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.51 46.0 2.97e-01 100.0% 45.4%
3242452 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.37e-01 94.2% 69.0%