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MN508817.1__QFR55749.1__JC221_103__00103

Bact-Vir

MN508817.1__QFR55749.1__JC221_103__00103

Identity

Accession:
MN508817 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Yersinia_phage_JC221

TaxID: 2654973

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-70
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 60.0 6.19e-01 100.0% 94.1%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.60e-01 100.0% 89.1%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 58.0 5.53e-01 100.0% 76.6%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.38e-01 100.0% 73.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.98e-01 100.0% 69.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.53e-01 100.0% 52.8%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 57.0 5.24e-01 100.0% 84.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 4.84e-01 100.0% 69.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.48e-01 96.4% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 60.0 5.30e-01 100.0% 69.6%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 55.0 5.14e-01 100.0% 89.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.36e-01 100.0% 80.0%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.47e-01 100.0% 96.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 50.0 5.06e-01 100.0% 85.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.52e-01 100.0% 88.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.53e-01 100.0% 93.3%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.15e-01 100.0% 82.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 55.0 4.90e-01 100.0% 74.7%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 4.95e-01 100.0% 82.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.54e-01 100.0% 93.2%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 53.0 4.82e-01 100.0% 82.5%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.22e-01 100.0% 86.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 4.32e-01 100.0% 47.1%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 50.0 4.69e-01 100.0% 88.2%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.12e-01 100.0% 65.0%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 50.0 4.53e-01 100.0% 76.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.06e-01 100.0% 84.8%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 47.0 4.61e-01 100.0% 98.4%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.57 45.0 4.52e-01 98.2% 91.2%
2wfgA00 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.56 45.0 3.08e-01 100.0% 41.2%
2if6B00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 38.0 2.76e-01 81.8% 87.2%
1w7cA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.26e-01 94.5% 72.6%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.93e-01 100.0% 90.0%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 54.0 5.43e-01 100.0% 76.4%
3715776 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 4.79e-01 100.0% 60.0%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.84e-01 100.0% 87.3%
3305577 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 53.0 5.34e-01 100.0% 78.2%
4471701 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.71 64.0 4.89e-01 100.0% 61.0%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.71 56.0 4.54e-01 100.0% 47.0%
3862537 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.70 54.0 5.67e-01 98.2% 92.0%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 58.0 5.34e-01 100.0% 84.0%
3399557 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.59e-01 100.0% 80.0%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 60.0 5.44e-01 100.0% 85.3%
4947702 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.36e-01 100.0% 85.3%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 57.0 5.20e-01 100.0% 82.1%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 59.0 5.14e-01 100.0% 75.3%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 59.0 5.35e-01 100.0% 84.0%
3259044 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.87e-01 100.0% 96.4%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 58.0 5.32e-01 100.0% 80.0%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 56.0 5.16e-01 100.0% 88.0%
3612063 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.67 58.0 3.59e-01 100.0% 24.7%
5072519 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 57.0 5.23e-01 100.0% 84.0%
3581696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.88e-01 100.0% 84.0%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 57.0 5.26e-01 100.0% 85.1%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.64e-01 100.0% 90.0%
4030943 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 54.0 5.00e-01 100.0% 78.5%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 4.90e-01 100.0% 62.4%
2756510 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.66 52.0 4.42e-01 100.0% 52.8%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 57.0 5.12e-01 100.0% 70.7%
4952114 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 55.0 5.18e-01 98.2% 87.1%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 56.0 5.34e-01 100.0% 81.5%
5077873 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 55.0 5.01e-01 100.0% 78.5%
3240676 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.65 56.0 3.73e-01 100.0% 42.2%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.08e-01 100.0% 78.8%
3623786 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 56.0 5.33e-01 100.0% 81.5%
3512420 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 4.83e-01 100.0% 62.4%
3589954 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 4.99e-01 100.0% 82.7%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.60e-01 100.0% 100.0%
5018743 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 55.0 5.05e-01 100.0% 82.7%
5041872 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 53.0 4.89e-01 100.0% 82.7%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 4.82e-01 100.0% 84.0%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.25e-01 100.0% 84.6%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 52.0 4.87e-01 100.0% 80.0%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 52.0 4.65e-01 100.0% 82.4%
1678740 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 53.0 4.84e-01 100.0% 82.1%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.93e-01 100.0% 84.0%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 54.0 5.08e-01 100.0% 78.6%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 53.0 4.97e-01 100.0% 85.7%
135285 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 53.0 4.82e-01 100.0% 82.1%
3736953 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.31e-01 100.0% 92.3%
5079888 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 51.0 4.75e-01 100.0% 82.1%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 53.0 4.89e-01 100.0% 82.7%
5055435 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 52.0 4.92e-01 100.0% 90.0%
5030535 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 52.0 4.83e-01 100.0% 86.7%
3999509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.66e-01 100.0% 65.6%
3590315 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 50.0 4.70e-01 100.0% 80.0%
4984135 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 51.0 4.61e-01 100.0% 77.4%
5072949 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 52.0 5.01e-01 100.0% 86.2%
5001481 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 52.0 4.78e-01 100.0% 84.0%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 46.0 4.79e-01 100.0% 98.0%
5065570 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 49.0 4.48e-01 100.0% 77.6%
4989408 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.61 51.0 4.48e-01 100.0% 69.7%
5008645 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 50.0 4.64e-01 100.0% 82.7%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.56e-01 100.0% 84.0%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 48.0 4.54e-01 100.0% 81.1%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.57 44.0 4.29e-01 100.0% 75.4%
5038213 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.57 44.0 4.55e-01 96.4% 98.0%
4028987 219.1.1.36 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.56 41.0 2.92e-01 80.0% 78.3%
3998970 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.54 38.0 2.78e-01 74.5% 61.9%
4103373 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.53 40.0 4.00e-01 100.0% 83.6%
3259022 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 39.0 2.76e-01 81.8% 87.0%
4110072 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.52 41.0 4.18e-01 98.2% 98.2%
4079873 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 38.0 3.05e-01 94.5% 41.7%