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MN508817.1__QFR55915.1__JC221_269__00269

Bact-Vir

MN508817.1__QFR55915.1__JC221_269__00269

Identity

Accession:
MN508817 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Yersinia_phage_JC221

TaxID: 2654973

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-75
PDB
Domain cluster: rep: IMGVR_UViG_3300005423_000195-3300005423-Ga0066828_100084225__D5-64
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16805.12 best Trans_coact 84.3 6.00e-24 100.0% 83.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.76 50.0 3.89e-01 74.3% 33.3%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 51.0 3.85e-01 78.6% 35.2%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.95e-01 80.0% 71.1%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 41.0 3.62e-01 84.3% 76.4%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.53 47.0 3.62e-01 100.0% 73.9%
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 35.0 3.19e-01 70.0% 54.5%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.48e-01 82.9% 60.0%
1kagA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.80e-01 72.9% 65.8%
1uaaA04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.51 45.0 3.45e-01 100.0% 77.2%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 36.0 3.34e-01 77.1% 82.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3751716 198.1.1.6 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › Saposin 0.72 51.0 4.92e-01 74.3% 68.8%
5067590 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.71 49.0 5.79e-01 81.4% 100.0%
5002776 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 4.93e-01 82.9% 85.0%
4142297 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.66 47.0 3.73e-01 75.7% 64.8%
2141639 198.1.1.6 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › Saposin 0.60 53.0 4.39e-01 95.7% 89.8%
3791585 109.4.1.134 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD 0.58 51.0 3.25e-01 100.0% 42.1%
4977761 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.57 40.0 3.73e-01 74.3% 71.1%
5022912 2003.1.1.379 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › HMD 0.56 40.0 2.65e-01 75.7% 38.0%
4227542 2004.1.1.363 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.54 48.0 2.77e-01 100.0% 17.0%
3497504 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.27e-01 100.0% 73.2%
4006300 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.53 48.0 2.77e-01 100.0% 18.8%