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MN512538.1__QGF21000.1__X__00038
Bact-VirMN512538.1__QGF21000.1__X__00038
Identity
- Accession:
- MN512538 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Taxonomy
TaxID: 2662136
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-86
Domain cluster:
rep: NC_074661.1__YP_010773257.1__QIT82_gp51__00051__D9-83
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07120.18 best | DUF1376 | 61.1 | 1.50e-16 | 98.7% | 90.7% |
D2
high
residues 157-208
Domain cluster:
rep: IMGVR_UViG_3300009688_000032-3300009688-Ga0116176_1000097024__D160-209
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t6pA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 54.0 | 5.08e-01 | 100.0% | 72.7% |
| 2lvaA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 46.0 | 4.86e-01 | 98.1% | 90.9% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 53.0 | 4.59e-01 | 98.1% | 67.4% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 3.97e-01 | 84.6% | 79.3% |
| 1i1rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 41.0 | 2.92e-01 | 78.8% | 92.8% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.57 | 38.0 | 3.01e-01 | 71.2% | 33.6% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.56 | 44.0 | 3.99e-01 | 100.0% | 64.3% |
| 1r71A02 | 6.10.250.140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 45.0 | 4.39e-01 | 100.0% | 84.5% |
| 5ck3C00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 43.0 | 3.54e-01 | 100.0% | 49.5% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.45e-01 | 73.1% | 73.2% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.50 | 37.0 | 3.48e-01 | 84.6% | 80.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934727 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.70 | 62.0 | 5.07e-01 | 100.0% | 63.2% |
| 5051569 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 58.0 | 5.15e-01 | 100.0% | 81.3% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.64 | 52.0 | 5.10e-01 | 100.0% | 88.1% |
| 3931221 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.63 | 53.0 | 3.81e-01 | 100.0% | 38.8% |
| 3989035 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.62 | 53.0 | 4.41e-01 | 100.0% | 68.4% |
| 4581259 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.62 | 46.0 | 4.51e-01 | 96.2% | 73.3% |
| 3220281 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.61 | 42.0 | 2.51e-01 | 75.0% | 19.1% |
| 4059386 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.59 | 51.0 | 4.79e-01 | 98.1% | 95.4% |
| 4518433 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.59 | 49.0 | 4.23e-01 | 100.0% | 61.1% |
| 4254733 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.57 | 49.0 | 3.27e-01 | 100.0% | 37.3% |
| 3243957 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 47.0 | 3.40e-01 | 98.1% | 85.0% |
| 3714954 | 103.1.1.89 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF7353 | 0.56 | 41.0 | 3.79e-01 | 100.0% | 60.0% |
| 3562094 | 6013.1.1.0 ↗ | alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 | 0.54 | 42.0 | 3.55e-01 | 86.5% | 66.7% |
| 4014760 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.53 | 38.0 | 3.75e-01 | 76.9% | 72.7% |