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MN536026.1__QIG56915.1__vBPaeSS2019XI_037__00037
Bact-VirMN536026.1__QIG56915.1__vBPaeSS2019XI_037__00037
Identity
- Accession:
- MN536026 ↗
- Kingdom:
- phage
Quality
65.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casjensviridae›
Maxdohrnvirus›
Pseudomonas_phage_vB_Pae-SS2019XI
TaxID: 2660688
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-81
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.66 | 34.0 | 3.10e-01 | 100.0% | 40.7% |
| 2xgvA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.61 | 53.0 | 4.30e-01 | 98.6% | 100.0% |
| 1mdyA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.60 | 39.0 | 3.93e-01 | 89.9% | 66.2% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 50.0 | 4.32e-01 | 98.6% | 87.8% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 47.0 | 3.04e-01 | 91.3% | 61.2% |
| 1xvpB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 48.0 | 3.37e-01 | 95.7% | 69.5% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.53 | 45.0 | 3.97e-01 | 100.0% | 69.4% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 44.0 | 4.26e-01 | 98.6% | 97.5% |
| 4jzaA03 | 1.20.120.1720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 38.0 | 3.02e-01 | 82.6% | 86.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938165 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.62 | 55.0 | 5.04e-01 | 100.0% | 90.0% |
| 3697926 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.59 | 51.0 | 3.99e-01 | 100.0% | 45.6% |
| 3286172 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.58 | 49.0 | 3.30e-01 | 92.8% | 91.5% |
| 3896785 | 108.1.1.48 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 | 0.58 | 49.0 | 4.81e-01 | 95.7% | 94.7% |
| 3742876 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.57 | 49.0 | 4.15e-01 | 100.0% | 55.2% |
| 3228442 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 46.0 | 3.67e-01 | 100.0% | 71.3% |
| 3977695 | 3711.1.1.1 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ | 0.53 | 42.0 | 3.57e-01 | 88.4% | 79.2% |
| 3514283 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 43.0 | 3.45e-01 | 100.0% | 74.2% |